Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_028241.1 Length=14478 Score E Sequences producing significant alignments: (Bits) Value seq1802 203 3e-48 >seq1802 Length=132586 Score = 203 bits (224), Expect = 3e-48 Identities = 388/566 (69%), Gaps = 32/566 (6%) Strand=Plus/Minus Query 9662 AATTGAAAGAAGCCGGACGATTCTTTTCCTTAATGTCCTGGGAATTAAGGGAATATTTCG 9721 |||| |||||| | | |||| ||| | | ||||||||| ||||||| || ||||||| Sbjct 31048 AATTAAAAGAATAGGTA-GATTTTTTGCTCTTATGTCCTGGAAATTAAGAGATTATTTCG 30990 Query 9722 TTGTAACTGAATTACTGATTAAACAACATTATGTAAAGTTGTTCAAAGGTTTGACCATGG 9781 | |||| ||| |||||||| |||| ||| ||||| || ||||| |||| Sbjct 30989 TAATAACAATATT--TGATTAAAGTGCATTTTGTGCCATTGTTTTCGGGATTGACTATGG 30932 Query 9782 CAGATGATCTCCAAACTGTCATAAAGAAAATGCTTGATACCTCACATGGTCAGGGAACCC 9841 ||||||| || | ||||| ||||||| ||| | ||||| || ||||||| || Sbjct 30931 CAGATGACCTTAATACTGTATTAAAGAAGATGTTAGATACTTCGAATGGTCAAGGGTTAG 30872 Query 9842 GTACATATGATGCCATCACCATTGCCAATAACATAGACTATGAAAAATGGAATAATTATC 9901 | |||||| || || ||||| ||| | || | |||||||| ||||| ||| ||| Sbjct 30871 ATGGATATGAATATATAACAATTGCTAATCATATTAATTATGAAAAGTGGAACAATCATC 30812 Query 9902 AGAGAATGGAATCAAACGGTCCTGTATTCAGAGTAATGGGTCAATTCTTGGGATATCCTA 9961 | ||| ||| | ||| |||||| |||| ||| ||||| ||||| || || ||||||| Sbjct 30811 AAAGAGATGAAGCGAACAATCCTGTTTTCACAGTCATGGGACAATTTTTAGGGTATCCTA 30752 Query 9962 ATTTGATA-CTCAGGACCCATGAGTTTTTTCAGAAAAGTTTAATTTATTATAATCAAAGA 10020 ||||||| ||| | |||||||| || || || |||||||||||||| || | ||| Sbjct 30751 ATTTGATCTCTC-GAACCCATGAATTCTTCCAATCGAGTTTAATTTATTACAACAATAGA 30693 Query 10021 CCTGATTTGATGAGAG----------TAGTTGGGAAAAGTGCTATGAACAGTACTAAACA 10070 |||||| | |||| || | ||| ||||| | | || | ||| | Sbjct 30692 CCTGATCTAATGACAGTTATAGAAGCTCGTTTAGAAAA---CAAAGACC----CTATGAA 30640 Query 10071 TATCGTGTGCTGGGAAGGGCAGCTGGGTGGTTTAGAAGGGCTGAGACAAAAGGGGTGGAG 10130 | || |||||| | || || || || |||| |||||||||||||| || || || Sbjct 30639 GAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGGGCTGAGACAAAAAGGATGAAG 30580 Query 10131 TGTTGTCAATTATTTAATGATTGAACGAGAATCTAAAGTAAGAAACAC----CTTAGTGA 10186 | | || |||| ||| ||| || ||||| |||||| ||| || |||||| Sbjct 30579 TATCGTTTATTA--TAAACATTAAAAGAGAAGGTAAAGTTGAAAATACGAGACTTAGT-- 30524 Query 10187 AAGTGTTGGCTCAGGGAGACAACCAA 10212 | ||||| || ||||| || ||| Sbjct 30523 --ATCTTGGCGCAAGGAGATAATCAA 30500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46207298951583