Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_028246.1 Length=14627 Score E Sequences producing significant alignments: (Bits) Value seq1802 241 1e-59 >seq1802 Length=132586 Score = 241 bits (266), Expect = 1e-59 Identities = 564/840 (67%), Gaps = 21/840 (3%) Strand=Plus/Minus Query 9711 TTTTTAAAAGAAATTAATGATCACGGTTTGGAGTGGGAAAAACTGGTAATAGGACTAAAA 9770 ||||| ||||| | |||||||| ||||| || |||| | || || || ||| || Sbjct 31122 TTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCTTGTTATCGGATTACGG 31063 Query 9771 GCTAAAGAGAGAGAATTAAAGATAGAAGGTAGAtttttttCATTGATGTCATATGACATG 9830 | || ||| || || | || | | ||||||||||||| | | ||||| | | | Sbjct 31062 GGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTATGTCCTGGAAATTA 31003 Query 9831 AGGGATTACTTCGTAATGACTGAATATTTGATaaaaaaaTATTATGTACCATTATTCAAA 9890 || ||||| |||||||| || |||||||||| ||| ||| ||| ||||| || Sbjct 31002 AGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTTGTGCCATTGTTTTCG 30945 Query 9891 GGATTGACCATGGCTGATGATCAAAATACAGTAGTAAAGAAAATGCTCAAAGTTTCTAAA 9950 |||||||| ||||| ||||| | ||||| ||| ||||||| ||| | | ||| || Sbjct 30944 GGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATGTTAGATACTTCGAAT 30885 Query 9951 GGTCAAGGGCTAACAGATTATAAAGAGATAACATTTGCTAATCACTTGGATTATGAGAAG 10010 ||||||||| || | ||| || | |||||| |||||||||| | ||||||| ||| Sbjct 30884 GGTCAAGGGTTAGATGGATATGAATATATAACAATTGCTAATCATATTAATTATGAAAAG 30825 Query 10011 TGGAATAATTATCAAAGGAGGGAATCAAACGGTCCGGTGTTCAGAGTAATGGGCCAGTTT 10070 ||||| ||| ||||||| ||| | ||| ||| || |||| ||| ||||| || ||| Sbjct 30824 TGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACAGTCATGGGACAATTT 30765 Query 10071 TTAGGTCTACCTCACTTAATAGAAAGAACTCACGAGTTCTTTGAAAATAGTCTAATTTAT 10130 ||||| ||| | || || |||| || || ||||| || ||| |||||||| Sbjct 30764 TTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAATCGAGTTTAATTTAT 30705 Query 10131 TACAATGGCCGACCTGATTTAATGTATGTCAGA-AATAAAGTTGTACACTCCAAAG--GT 10187 ||||| |||||||| ||||| || | | || ||| || | ||||| Sbjct 30704 TACAACAATAGACCTGATCTAATGACAGTTATAGAAGCTCGTT-TAGAAAACAAAGACCC 30646 Query 10188 GATG-ACATCGTTTGCTGGGAAGGACAAAAAGGAGGATTAGAGGGTCTAAGACAAAAAGG 10246 ||| | | ||||||||| | || ||| ||||||| ||||||| || ||||||||||| Sbjct 30645 TATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGGGCTGAGACAAAAAGG 30586 Query 10247 ATGGAGTGTCCTTAATTGCCTAATGATTGAGAGAGAATCAAAGATTCGGAACACCCAAAT 10306 ||| ||| || || ||| ||| ||| | |||||| || || || || | | Sbjct 30585 ATGAAGTATCGTTTATT--ATAAACATTAAAAGAGAAGGTAAAGTTGAAAATACGAGACT 30528 Query 10307 CGGCTTATTGGCCCAGGGAGACAACCAAGTAATCACAACACATTATAAAGTTGAG-CCAT 10365 | | ||||| || ||||| || ||||| || || || |||||| | || || Sbjct 30527 TAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAATATAAACTGCAGAAGAT 30468 Query 10366 ---ATCAA--AATGACAATGAATTAATCTTCCACATCAATAATATTATATCGAATAATAA 10420 ||||| ||||| | | || ||| | ||| | | |||||||| || || || Sbjct 30467 ACGATCAAGCAATGA-ACTAGATGAATGT-----ATCCAAAGAATTATATCAAACAACAA 30414 Query 10421 TCGTATAATGGATGCAATAATAGAAGGAACAGAAAAGTTGGGCTTAAAAATAAACATGGA 10480 | |||||| | ||| | ||||||| | | || || ||| || || Sbjct 30413 TAAAATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGGATTGTTAATTAATCAAGA 30354 Query 10481 TGAGACAATTCAGAGTGCAGATTATATTAACTATGGGAAAGTTCCGATATATAGAGGGAA 10540 ||| || || || || |||||| | || |||||||| |||||||| | | | ||||| Sbjct 30353 TGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAGGTTCCGATTTTTCGTGGGAA 30294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46684058701170