Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_028255.1 Length=11003 Score E Sequences producing significant alignments: (Bits) Value seq1802 179 3e-41 >seq1802 Length=132586 Score = 179 bits (198), Expect = 3e-41 Identities = 741/1150 (64%), Gaps = 28/1150 (2%) Strand=Plus/Minus Query 5880 AACACATGGCCTACAGCTGCTCAAGTTCA-AGACTTCGGAGACCTGTGGCATGAACTTCC 5938 || ||||||||||| | ||| | ||| |||||| || || | |||||| ||||| Sbjct 31362 AATACATGGCCTACTCCATTTCA-GATCAGAGACTTTGGGGATCAATGGCATACTCTTCC 31304 Query 5939 TTTAACCAAATGTTTTGACATCCCTGACTTAATAGACCCCTCAATCATTTATTCGGATAA 5998 ||| | || |||||||| ||||| || | || || || | || ||| | ||||| Sbjct 31303 TTTGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTAATCTATGCTGATAA 31244 Query 5999 AAGTCACTCAATGAATCGAAGTGAAGTTTTACGGCATGTTAGGAATAGCCCAAACACTCC 6058 ||| || ||||| | | | | | || || |||||| || || || || | ||| Sbjct 31243 AAGCCATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAATATCCGAATATTCC 31184 Query 6059 AATCCCTAGCAAAAAAGTGTTGCAGACCATGTTGGACACCACGGCTACCAATTGGTCTGA 6118 ||||| || || || | |||| | | ||| | || || | ||| Sbjct 31183 GATCCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCCGCAACAGAATGGAAAAC 31124 Query 6119 GTTCTTGAACCAAATAGACAAGTATGGACTAGACGATGAAGATTTGGTGATTGGTCTCAA 6178 || ||||| | | | | |||| ||||| ||| || | || || || | Sbjct 31123 CTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCTTGTTATCGGATTACG 31064 Query 6179 AGGAAAAGAGAGAGAATTGAAACTAGCCGGAAGATTCTTTTCCTTGATGTCTTGGAAATT 6238 || || ||| || || | ||| | || ||||| ||| | | ||||| |||||||| Sbjct 31063 GGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTATGTCCTGGAAATT 31004 Query 6239 ACGTGAATATTTTGTAATCACGGAATATCTTATCAAAACACACTTTGTCCCCATGTTCAA 6298 | | || ||||| ||||| || ||||| | || ||| || ||||| || |||| Sbjct 31003 AAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTTGTGCCATTGTTTTC 30946 Query 6299 GGGACTAACCATGGCAGATGATCTAACTGCTGTCATCaaaaaaaTGTTGGATACATCCTC 6358 |||| | || ||||||||||| || | | |||| | || || ||||| ||||| || Sbjct 30945 GGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATGTTAGATACTTCGAA 30886 Query 6359 AGGTCAAGGATTGGACAATTACGAGTCCATTTGTATCGCGAATCACATTGATTATGAGAA 6418 |||||||| || || || || | || || || ||||| ||| ||||||| || Sbjct 30885 TGGTCAAGGGTTAGATGGATATGAATATATAACAATTGCTAATCATATTAATTATGAAAA 30826 Query 6419 ATGGAACAACCATCAACGCAAGGAATCCAATGGGCCTGTATTTCGTGTGATGGGACAGTT 6478 |||||||| |||||| | | ||| | || ||||| || || |||||||| || Sbjct 30825 GTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACAGTCATGGGACAATT 30766 Query 6479 CCTAGGATACCCAAACCTGATTGAGAGGACACACGAATTCTTCGAGAAGAGCTTGATCTA 6538 |||| || || || |||| | || || ||||||||| | ||| || || || Sbjct 30765 TTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAATCGAGTTTAATTTA 30706 Query 6539 CTATAATGGACGTCCAGACTTAATG-CAGGTCTCGGGAAATACCCTCATCA---ACAGGT 6594 || || | || || ||||| ||| | | ||| | | | | | || Sbjct 30705 TTACAACAATAGACCTGATCTAATGACAGTTAT--AGAAGCTCGTTTAGAAAACAAAGAC 30648 Query 6595 CTAATCAA-TTGGTCTGCTGGCAGGGACAAGCAGGAGGGCTGGAAGGCCTTCGTCAGAAA 6653 | || || ||| |||||| | || ||||||||||| || || || || | || ||| Sbjct 30647 CCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGGGCTGAGACAAAAA 30588 Query 6654 GGATGGAGCATCCTGAACTTGCTAGTAATCCAAAGAGAAGCTAAAGTCCGAAACACAGCA 6713 ||||| || ||| | | | || || ||||||||| |||||| ||| || | Sbjct 30587 GGATGAAGTATCGTTTA--TTATAAACATTAAAAGAGAAGGTAAAGTTGAAAATACGAGA 30530 Query 6714 GTCAAGGTGTTGGCACAAGGGGATAATCAAGTGATTTGCACTCAATACAA---GACAAAG 6770 | | | ||||| ||||| ||||||||||| | || |||||||| || | ||| Sbjct 30529 CTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAATATAAACTGCAGAAG 30470 Query 6771 A---AATCTAGAGATGACACAGAGCTAAGGTCAGCCCTTAAGCAGATGGTGTCTAACAAT 6827 | ||| || |||| ||| || || | || ||| || | || ||||| Sbjct 30469 ATACGATCAAGCAATGAACTAGA-TGAATGT-ATCC--AAAG--AATTATATCAAACAAC 30416 Query 6828 GAAAACATTATGCAGGCA-ATTAAGGAAGGAACAGGAAAGTTGGGCTTGGTTATCAACGA 6886 | || || ||| || | || | ||||||| | || ||| | || || | Sbjct 30415 AATAAAATAATG-AGTAACATAGAAAAAGGAACTAATCGACTCGGATTGTTAATTAATCA 30357 Query 6887 TGATGAAACAATGCAGTCAGCGGATTATCTGAATTATGGGAAAATTCCCATCTTTCGCGG 6946 |||||||| ||| |||||||||||||| ||||||||||||| |||| || ||||| || Sbjct 30356 AGATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAGGTTCCGATTTTTCGTGG 30297 Query 6947 GGTGATAAGAGGACTCGAAACTAAAAGATGGTCGCGGGTCACATGTGTGACAAATGACCA 7006 | ||| ||| | ||| | ||||||||||| || || ||||| || | || || || Sbjct 30296 GAAAGTAAAAGGGATGGAATCAAAAAGATGGTC-CGAGTAGCATGTATGTCTAACGATCA 30238 Query 7007 AATTCCAACA 7016 | | || ||| Sbjct 30237 ATTACCTACA 30228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35091517477588