Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_031236.1 Length=11165 Score E Sequences producing significant alignments: (Bits) Value seq1802 190 1e-44 >seq1802 Length=132586 Score = 190 bits (210), Expect = 1e-44 Identities = 567/856 (66%), Gaps = 29/856 (3%) Strand=Plus/Minus Query 6269 AACTAAAAGCACAGGGAAGATTCTTCTCCCTGCTTTCTTGGGTACTTAGAGAGTATTTTG 6328 || |||||| | ||| | |||| || | || | || ||| | | ||||| ||||| | Sbjct 31048 AATTAAAAGAATAGGTA-GATTTTTTGCTCTTATGTCCTGGAAATTAAGAGATTATTTCG 30990 Query 6329 TCGTAACGGAATATCTTATAAAGATCCATTTCCTCCCTCTTTTTAAGGGACTGACTATGG 6388 | |||| ||||| | || || | ||||| | || | ||| |||| ||||||||| Sbjct 30989 TAATAAC--AATATTTGATTAAAGTGCATTTTGTGCCATTGTTTTCGGGATTGACTATGG 30932 Query 6389 CTGATGACTTGACTACCCTCACCAAGAAGATGCTGGACACCTCCTCGGGTCAAGGGTTAA 6448 | |||||| | | ||| | ||||||||| | || || || |||||||||||| Sbjct 30931 CAGATGACCTTAATACTGTATTAAAGAAGATGTTAGATACTTCGAATGGTCAAGGGTTAG 30872 Query 6449 GTGGATACGACAAAATTAGTTATGCTAACCATTTGGATTATGAGAAGTGGAACAATTATC 6508 |||||| || | || | |||||| ||| | ||||||| |||||||||||| ||| Sbjct 30871 ATGGATATGAATATATAACAATTGCTAATCATATTAATTATGAAAAGTGGAACAATCATC 30812 Query 6509 AAAGGATTGAGTCCAACGGACCGGTCTTCAAAGTCATGGGACAGTTTCTGGGGTATCCAA 6568 |||| ||| | ||| || || |||| |||||||||||| ||| | |||||||| | Sbjct 30811 AAAGAGATGAAGCGAACAATCCTGTTTTCACAGTCATGGGACAATTTTTAGGGTATCCTA 30752 Query 6569 ATCTTATATATCGAACACATGAGTTCTTCCAGAAAAGCATCATTTACTACAATGATAGGC 6628 || | || | |||||| ||||| |||||||| || | ||||| ||||| |||| | Sbjct 30751 ATTTGATCTCTCGAACCCATGAATTCTTCCAATCGAGTTTAATTTATTACAACAATAGAC 30692 Query 6629 CGGATTTGATGGTAG-TAGAGAA---CGGGATGATAGTGAA-TCGCACTGAAGAGAGAGT 6683 | ||| | ||| || || |||| || || | || | | ||| |||| || Sbjct 30691 CTGATCTAATGACAGTTATAGAAGCTCGTTTAGAAAACAAAGACCCTATGA--AGAGGGT 30634 Query 6684 AGTGTGGAACGGACAAGCTGGGGGATTGGAAGGATTAAGGCAGAAAGGATGGAGTGTTTT 6743 ||||| || ||||| || ||| | || || | || || |||||||| ||| | | Sbjct 30633 TTGCTGGAATGGTCAAGCAGGAGGACTAGAGGGGCTGAGACAAAAAGGATGAAGTATCGT 30574 Query 6744 GAATGCATTATCGATTGCCAGAGAGGGACGAGATAGAAACACCAAGCTTGCTCTTTTGGC 6803 || || | | ||| ||||| || || | ||| || | ||| | | ||||| Sbjct 30573 TTAT-TATAAAC-ATTAAAAGAGAAGGTAAAGTTGAAAATACGAGACTTAGTATCTTGGC 30516 Query 6804 TCAAGGGGACAACCAAATTATCTTCACCAACTACAAGATGCAG--GAT----TACAGAGA 6857 ||||| || || ||| || ||| || | || || ||||| ||| | || | Sbjct 30515 GCAAGGAGATAATCAAGTTGTCTGTACTCAATATAAACTGCAGAAGATACGATCAAGCAA 30456 Query 6858 TGAAAGAGAGCTTAAGTGTAATCTGGAACGAATCAGGATC-AATAACGATCAGATTATGA 6916 |||| ||| | | |||| | || |||| | ||| || ||| || | || |||| Sbjct 30455 TGAACTAGA---TGAATGTA---TCCAAAGAATTA-TATCAAACAACAATAAAATAATGA 30403 Query 6917 AGTCCATAGAAAGTGGAA-TAATAAAGCTTGGACTGAAAATCAATCAAGACGAGACAATG 6975 |||||||| |||| |||| | || ||| || ||| |||||||| || || ||| Sbjct 30402 GTAACATAGAAAAAGGAACTAATCGA-CTCGGATTGTTAATTAATCAAGATGAAACCATG 30344 Query 6976 CAATCTGCTGATTTCACCAATTATGGTAAAATACCGATAATCCGAGGAAACATATACCCA 7035 | || || |||| |||||||| || | ||||| | || || || || | Sbjct 30343 AAGTCAGCGGATTATTTGAATTATGGGAAGGTTCCGATTTTTCGTGGGAAAGTAAAAGGG 30284 Query 7036 TTAGAGACAAAAAGATGGTCTAGGGCTGCTTGTGTGACTAATGATCAGTTACCCAGCCTA 7095 | || ||||||||||||| | | || ||| || |||| ||||| ||||| | || Sbjct 30283 ATGGAATCAAAAAGATGGTC-CGAGTAGCATGTATGTCTAACGATCAATTACCTACAATA 30225 Query 7096 GGAAATGTTATGTCTA 7111 | ||| | || |||| Sbjct 30224 AGTAATATAATCTCTA 30209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35609874898156