Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_031278.1 Length=12247 Score E Sequences producing significant alignments: (Bits) Value seq1802 284 9e-73 >seq1802 Length=132586 Score = 284 bits (314), Expect = 9e-73 Identities = 936/1428 (66%), Gaps = 43/1428 (3%) Strand=Plus/Minus Query 6786 TATGGATCATTCCGACATTGGGGACATCCGTACATTGATTATCTGAACGGGTTGAGGCTG 6845 || |||||||| |||||||||| ||||||| |||| ||||| | || | | | Sbjct 31593 TACGGATCATTTAGACATTGGGGGCATCCGTTTCTTGACTATCTACAAGGACTCAAAAAG 31534 Query 6846 TTGCATTATCAGGTCAATTGTGAAAAACAA-ATTGATACAAATTACGCTAATCAGCTTGC 6904 || ||| | || ||| | | || || | |||||| || || || | | || Sbjct 31533 TTACATGAACAAA-CAACTTTAAAGAAAACGATTGATCGAAGATATGCGCAGGCATTAGC 31475 Query 6905 TAGTGATTTAGCATATATAGTGTTGCATGATCAATTTAAGAAGAAGAAAACATGGATGGT 6964 ||||| |||||| |||| |||||| | ||||||| | || ||||| | ||| || Sbjct 31474 AAGTGACTTAGCACATATTGTGTTGAAGAATCAATTCGACAAAAAGAAGATTTGGTCAGT 31415 Query 6965 GGATATTGATCAGATG-GATAGGAACAATCT---TATGTATCCATTCGTGAAACAAAATA 7020 || | ||| || || | || || || |||| || ||| | ||||||| Sbjct 31414 TGAAACCAATCTATTGCGAAAAGATCACCCTCTATATGACTCAATTACT----CAAAATA 31359 Query 7021 CATGGCCTACACCTGCTTTGAT-AGATGACTTCGGTGATCACTGGCATCAATTGCCGCTC 7079 |||||||||| || | ||| ||| ||||| || ||||| |||||| | || | Sbjct 31358 CATGGCCTACTCCATTTCAGATCAGA-GACTTTGGGGATCAATGGCATACTCTTCCTTTG 31300 Query 7080 AAAAAATGTTTTGACATACCGGATATGTTTGATCCTTCCACGTTGTATTCAGATAAGAGT 7139 ||||| |||||||| || || ||| || | |||||| | ||| | ||||| || Sbjct 31299 AAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTAATCTATGCTGATAAAAGC 31240 Query 7140 CACTCTATGAACAAGAACGAGGTAATCGATTTTATG--AGAAAGAACCCTGATCAGCCGA 7197 || || || | | | || | || | ||| ||||| | || || |||| Sbjct 31239 CATTCAATCACTTA--ATCAGCAATTCTAGAGCATGTAAGAAAATATCCGAATATTCCGA 31182 Query 7198 TTCCTTCAAAGAAGGTTTTGTACACCCTACTCACTAGGCCTTCTAGAGATTGGCCAACTT 7257 | || ||||||||||| | | || | ||| || || | | ||| ||| ||| | Sbjct 31181 TCCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCCGCAACAGAATGGAAAACCT 31122 Query 7258 TTCTGAAACAAATCAACGATGAGGGTCTCGATATC-AACGCCTTGATAATAGGCTTAAGA 7316 || ||||| | |||| ||| | ||| | || || |||| || | || ||| | Sbjct 31121 TTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCTTGTTA-TCGGATTACGG 31063 Query 7317 GAGAAAGAAAGAGAAATCAAGATCAATGGCCGATTCTTTTCTCTGATGTCCTGGGATTTA 7376 | ||| || || |||| || | | || |||| ||| |||| ||||||||| | ||| Sbjct 31062 GGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTATGTCCTGGAAATTA 31003 Query 7377 CGAGATTATTTTGTTATAACGGAGTATCTGATTAAAACCCATTTTGTTCCCCTCTTTTAT 7436 |||||||||| || ||||| | ||| |||||||| |||||||| || | |||| Sbjct 31002 AGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTTGTGCCATTGTTTTCG 30945 Query 7437 GGACTGACAATGGCTGATGATATGACAACAGTAGTACGCAAGATGATGGAAAACACCAGT 7496 ||| |||| ||||| ||||| | | || ||| || |||||| | || | | | | Sbjct 30944 GGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATGTTAGATACTTCGAAT 30885 Query 7497 GGACAGGGTTCTGATGATTATGAGCACATAGGAATTGCCAATCACTTGGATTATGAAAAG 7556 || || || | |||| ||||| | ||| |||||| ||||| | ||||||||||| Sbjct 30884 GGTCAAGGGTTAGATGGATATGAATATATAACAATTGCTAATCATATTAATTATGAAAAG 30825 Query 7557 TGGAATAATCACCAAAGATACCAATCTACAGAACCTGTATTCACAGTCATGGGCAAATTC 7616 ||||| ||||| |||||| | || | | | ||||| |||||||||||||| |||| Sbjct 30824 TGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACAGTCATGGGACAATTT 30765 Query 7617 CTCGGATATCCGAATTTAATTGCGAGAACTCATGAGTTCTTCGAGAAAAGCTTCATTTAC 7676 | || ||||| ||||| || | |||| ||||| |||||| | || || ||||| Sbjct 30764 TTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAATCGAGTTTAATTTAT 30705 Query 7677 CACGGCGGTAGAGCAGACTTAATGA-AGATCTCCAACGGCAACATAGTTAACAAGGATCC 7735 || | |||| | || |||||| || | | || | ||| ||||| || || Sbjct 30704 TACAACAATAGACCTGATCTAATGACAGTTATAGAA-GCTCGTTTAGAAAACAAAGACCC 30646 Query 7736 CAGTAAGATGGTATGCTGGCAGGGCCAGAAGGGCGGATTGGAAGGACTTCGACAAAAGGG 7795 | |||| ||| |||||| | || || || ||| | || || || ||||||| || Sbjct 30645 TATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGGGCTGAGACAAAAAGG 30586 Query 7796 GTGGAGCATATTGAATCTATTAGTCATTCGAAGGGAAGGACAAGACCGGAACACCCGAAT 7855 || || ||| | | | || |||| ||| ||||| ||| || || || | Sbjct 30585 ATGAAG--TATCGTTTATTATAAACATTAAAAGAGAAGGTAAAGTTGAAAATACGAGACT 30528 Query 7856 CCGATGCTTAGCTCAAGGAGATAATCAGGTTATCTGTACACAATATAAACTTCAAAAATT 7915 | ||| || |||||||||||||| ||| ||||||| ||||||||||| || || | Sbjct 30527 TAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAATATAAACTGCAGAAGAT 30468 Query 7916 TCGAACTGAAG--AGGAGCTGAAAACCAACATAACCAA--CATCGTTGCCAATAATCAAT 7971 ||| | ||| | || || | | || || |||| || | | || || |||| Sbjct 30467 ACGA--TCAAGCAATGAACT--AGATGAATGTATCCAAAGAATTATATCAAACAA-CAAT 30413 Query 7972 ACATTTTAAAGAG---AATCGAAGATGGAACAAAGAAAATCGGTCTCATGATAAACCAAG 8028 | | ||| ||| || ||| | ||||| || | |||| | | || || |||| Sbjct 30412 AAA--ATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGGATTGTTAATTAATCAAG 30355 Query 8029 ATGAGACCATGCAGAGTGCGGACTATTTAAACTACGGGAAAATTCCCATATTCCGGGGGA 8088 |||| |||||| || ||||| ||||| || || ||||| |||| || || || |||| Sbjct 30354 ATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAGGTTCCGATTTTTCGTGGGA 30295 Query 8089 A--TATGAGGAACTTGGAGACAAAGCGATGGGCCCGTGTTACCTGTGTCACAAATGATCA 8146 | || ||| | |||| |||| ||| || ||| || | ||| | | || ||||| Sbjct 30294 AAGTAAAAGGGA--TGGAATCAAAAAGAT-GGTCCGAGTAGCATGTATGTCTAACGATCA 30238 Query 8147 AGTACCCACTCTAGCAAATACCATGTCTACTGTATCCACAAATGCATT 8194 | |||| || || |||| || |||| ||||| | || ||||| Sbjct 30237 ATTACCTACAATAAGTAATATAATCTCTATGGTATCTTCTAACGCATT 30190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39071990509604