Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_031282.1 Length=12651 Score E Sequences producing significant alignments: (Bits) Value seq1802 334 6e-88 >seq1802 Length=132586 Score = 334 bits (370), Expect = 6e-88 Identities = 982/1483 (66%), Gaps = 64/1483 (4%) Strand=Plus/Minus Query 7456 CACAACACTTGGCCAACTCC---TCACATCATTGAACAATTTGGGGATCACTGGCATGAA 7512 || || || ||||| ||||| ||| |||| || ||||||||||| |||||| Sbjct 31365 CAAAATACATGGCCTACTCCATTTCAGATCAGAGAC---TTTGGGGATCAATGGCATACT 31309 Query 7513 TTGCCAATTATTAAGTGTTTCGATATCCCCGATGTGATTGATCCATCATTGATATATTCT 7572 | || | | |||||||| || |||||||||||||| ||||| || || ||| || Sbjct 31308 CTTCCTTTGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTAATCTATGCT 31249 Query 7573 GATAAGAGTCATTCAGTCACACGGTCTGAATTAAAAGAACATATAGCTAAATCACCGTAC 7632 ||||| || |||||| |||| || | | | ||| ||| || |||| ||| | Sbjct 31248 GATAAAAGCCATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAATATCCGAAT 31189 Query 7633 AAACCCGT---GTCAAATCCAAAAGTTTT-GAAATCTTTATTAACTAAACCGGCTACTGA 7688 | || | |||||| || || | || | ||||| ||| | || || || || Sbjct 31188 ATTCCGATCCCGTCAAAG---AAGGTACTAGAGACTTTTATCAAC-AGTCCCGCAACAGA 31133 Query 7689 TTGGCCCTCATTTCTGGAA----TCAATTGATAAGTACGGATTAGATCTGGAATATTTAA 7744 ||| | ||| || || ||||| ||| | || ||||| | ||||||| | Sbjct 31132 ATGGAAAACCTTTTTGAAAGAGGTCAAT-GATCAT---GGTTTAGACCCGGAATATCTTG 31077 Query 7745 TCATTGGATTAAAGGAGAAAGAGCGAGAAATCAAGAAAGACGGGAGATTCTTCTCTCTTA 7804 | || |||||| || ||| |||||| |||| || | | || ||||| || |||||| Sbjct 31076 TTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTA 31017 Query 7805 TGTCGTGGCAACTCAGGGATTACTTTGTAATAACCGAATATTTGATCAAGCAACACTTTG 7864 |||| ||| || | || ||||| || |||||||| |||||||||| || || |||| Sbjct 31016 TGTCCTGGAAATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTTG 30959 Query 7865 TCCCATTATTCGACGGTTTGACTATGGCAGATGATCTCACGACTGTTATCAAGAAAATGA 7924 | ||||| || || ||||||||||||||||| || | ||||| | ||||| ||| Sbjct 30958 TGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATGT 30899 Query 7925 TGGACAACGCAAATGGTCAAGGATTAGATACCTATGATTATATATCCATAGCCAATCATA 7984 | || | | ||||||||||| |||||| ||||| |||||| | || || ||||||| Sbjct 30898 TAGATACTTCGAATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGCTAATCATA 30839 Query 7985 TAGATTATGAAAAGTGGAATAATCATCAGAGGAAAGAATCCACTACCCCAGTATTTAAGG 8044 | |||||||||||||||| |||||||| || | ||| | | | || || || | | Sbjct 30838 TTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACAG 30779 Query 8045 TAATGGGTCAATTCCTAGGTTACCCTAACCTTATTAGCCGAACTCACGAATTCTTCGAAA 8104 | ||||| ||||| |||| || ||||| | || ||||| || ||||||||| || Sbjct 30778 TCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAAT 30719 Query 8105 GGAGTTTAATTTACCATGGCGGGAGAACAGACCTAATGAGGATCGTCAATGGTGAAGTAG 8164 |||||||||||| | | ||| | || ||||||| | | | | | ||| Sbjct 30718 CGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGTTATAGAAGCTCGTTTAG 30659 Query 8165 AAAATAA--TTCGGAT-ATCCGAGTATGTTGGAATGGACAGAAAGGAGGTCTGGAAGGAT 8221 |||| || | || | | || || |||||||| || |||||| || || || Sbjct 30658 AAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGGGC 30599 Query 8222 TGAGACAGAAAGGTTGGAGCATTCTAAACCTTCTACTGATTAAAAGAGAAGGGTCATCCA 8281 ||||||| ||||| || || || | | || || |||||||||||||| | Sbjct 30598 TGAGACAAAAAGGATGAAGTATCGTTTA--TTATAAACATTAAAAGAGAAGGTAAAGTTG 30541 Query 8282 GAAACACATCTATCAAAACTTTAGCTCAAGGGGATAATCAAGTCATCTGCACCCAGTATC 8341 ||| || | | | || || ||||| ||||||||||| |||| || || ||| Sbjct 30540 AAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAATATA 30481 Query 8342 GTCTACAGAA-ATACAGAACACAAGAAGAAATGGTCGAAAGAATCCAAAAAATTGT-TCA 8399 || ||||| |||| || || | ||| | | ||| | ||||||| |||| | ||| Sbjct 30480 AACTGCAGAAGATAC-GATCAAGCAATGAACTAGATGAATGTATCCAAAGAATTATATCA 30422 Query 8400 A--AATAATCAAGCAATCATATCAAATATTGAAAACGGTACCAGGAGATTGGGCTTAATA 8457 | || ||| | ||| || || || ||||| || || | || | || || || Sbjct 30421 AACAACAATAA---AATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGGATTGTTA 30365 Query 8458 ATCAACAAAGACGAAACAATGCAGTCAGCAGACTTTTTGAGTTATGGTAAAGTTCCCGTA 8517 || || |||| ||||| ||| ||||||| || | ||||| |||||| || ||||| | Sbjct 30364 ATTAATCAAGATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAGGTTCCGATT 30305 Query 8518 TTCAGAGG--AACCATTCGGAATCTTGAAACTAAACGTTGGTCCAGAGT--CATGTGCAC 8573 || | || || | || | | ||| | ||| | |||||| |||| ||||| | Sbjct 30304 TTTCGTGGGAAAGTAAAAGGGA--TGGAATCAAAAAGATGGTCC-GAGTAGCATGT--AT 30250 Query 8574 TACAAACGATCAGATTCCAACTCAAGCCAATGTTTTAGCTACAGTTACAACAAATGCTTT 8633 | |||||||| | || || | ||| | | ||| || | | || || || Sbjct 30249 GTCTAACGATCAATTACCTACAATAAGTAATATAATCTCTATGGTATCTTCTAACGCATT 30190 Query 8634 AACAGTTGCCCATTATGCAGAAGGTCCCATTAATTCCATGTTCCATTATAACGTCATCGG 8693 | | || | || | | ||||| ||| | |||| || |||||||||| | | || Sbjct 30189 ATCTGTAGGGCACTTTTCAGAATCTCCTTTGGATTCAATTATCCATTATAATTTTCTAGG 30130 Query 8694 AAATTT--TGCAAGAAATCTCATCAATATTCACAATCCAGCACTTAGATGTGAAG-TCGG 8750 |||||| | |||| ||| | || |||| || |||||| ||| | | || || | Sbjct 30129 AAATTTAGTTTTAGAAGTCT--TAGATCTTCATAACCCAGCAATTAAA---GCAGCTCCG 30075 Query 8751 AACGAT--ACTTG-TCCAACCTAACCAGCTGACCCGTCTCAGT------TACAAAATTGC 8801 || || ||||| ||||| | | || | | | ||||| | || | |||| Sbjct 30074 -ACAATTCACTTGACCCAACTTGAACAACAAAACTTTCTCAATCGAAAATATAGAATTTT 30016 Query 8802 CTCTTTATACTTAGATCCATGCTTGGGCGGGATTGGTGGAATGTCACTAACACGATTCCT 8861 ||||| |||||||| | |||||||| || | |||||||||||||| || || | Sbjct 30015 AGTATTATATTTAGATCCCTCTTTGGGCGGCATCTGCGGAATGTCACTAACTCGTTTTTT 29956 Query 8862 AATTAGACAGTTCCCGGACCCTGTATGTGAAAGTTTAACCTTT 8904 ||| ||| || || || |||||| |||||||||| | ||| Sbjct 29955 AATCAGAGCATTTCCTGATCCTGTAACTGAAAGTTTATCATTT 29913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40364684323860