Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_031301.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq1802 325 3e-85 >seq1802 Length=132586 Score = 325 bits (360), Expect = 3e-85 Identities = 884/1327 (67%), Gaps = 57/1327 (4%) Strand=Plus/Minus Query 5753 GTAGTGTATGGATCATTTCGACATTGGGGACATCCATTTATTGATTATCTACTAGGATTG 5812 || || || ||||||||| |||||||||| ||||| ||| |||| ||||||| |||| | Sbjct 31599 GTTGTTTACGGATCATTTAGACATTGGGGGCATCCGTTTCTTGACTATCTACAAGGACTC 31540 Query 5813 GAAGCACTTCATACACAAGTACATCT---ACCAAAACGTATAGATGAAAATTATGCCAAA 5869 || | ||| |||| ||| || | |||||| || ||| || ||||| | Sbjct 31539 AAAAAGTTACATGAACAA--ACAACTTTAAAGAAAACG-ATTGATCGAAGATATGCGCAG 31483 Query 5870 TTACTAGGAAGTGATCTTGCATATTTGGTATTAAAGAAGAAATTTACCGAAGAAAAGAAA 5929 | ||| |||||| | ||| || | || || ||||| |||| | || | |||| Sbjct 31482 GCATTAGCAAGTGACTTAGCACATATTGTGTTGAAGAATCAATTCGACAAAAAGAAGATT 31423 Query 5930 TGGTATGTAGATCTAACCAAAATA----GAACAAAATCATCCTCTATATAAA-CA--TAT 5982 |||| || || |||||| || ||| || |||| ||||||||| | || || Sbjct 31422 TGGTCAGTTGA---AACCAATCTATTGCGAA-AAGATCACCCTCTATATGACTCAATTAC 31367 Query 5983 TCAAGAGAATACATGGCCAACTCCAAAACAAATTGAGGACTTTGGAGATAAATGGAATGA 6042 |||| ||||||||||| |||||| || || |||||||| ||| ||||| || Sbjct 31366 TCAA---AATACATGGCCTACTCCATTTCAGATCAGAGACTTTGGGGATCAATGGCATAC 31310 Query 6043 GTTGCCTTTAACAAAATGTTTTGATATCCCTGATATAATTGATCCCAGTTTACTTTATTC 6102 | ||||| | ||| |||||||| ||||| ||| | || ||||| |||||| | ||| | Sbjct 31309 TCTTCCTTTGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTAATCTATGC 31250 Query 6103 AGATAAGAGTCACTCTATGAATAGGGATGAAGTTATTAATCATGTTTCAAGGTATCCAAA 6162 ||||| || || || || | | | | || | | ||||| || ||||| || Sbjct 31249 TGATAAAAGCCATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAATATCCGAA 31190 Query 6163 TGTCCCTATTCCAACAAAAAAGGTCTTAGATACATTACTACATACTAAAAGTACCAATTG 6222 | | || || || |||| ||||| |||| || || | | | | || | || Sbjct 31189 TATTCCGATCCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCCGCAACAGAATG 31130 Query 6223 GCCTGTGTTTTTACAAGAAATTAACGATCATGGATT--ACCAAGAAATTCTAAAATTATT 6280 | ||||| |||| | || |||||||| || ||| ||| ||| |||| Sbjct 31129 GAAAACCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCT--TGTTATC 31072 Query 6281 GGCTTGAAGGGAAAGGAACGTGAAGTTAAGAAAAAAGGTCGTTTCTTTTCTCTAATGTCA 6340 || || ||| ||||| || || |||| | || |||| | || ||| |||| ||||| Sbjct 31071 GGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTATGTCC 31012 Query 6341 TGGATGTTGCGAGAATATTTTGTGATAACAGAATATTTAATCAAGGAGAATTACGTTCCT 6400 |||| || |||| ||||| || ||||| ||||||| || || | | ||| || || Sbjct 31011 TGGAAATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTTGTGCCA 30954 Query 6401 CTGTTTAGTGGATTGACAATGGCTGATGATTTGACAACTGTCATATCAAAATTGTTAGAT 6460 ||||| |||||||| ||||| ||||| | | ||||| || || |||||||| Sbjct 30953 TTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATGTTAGAT 30894 Query 6461 A---GGA---GTCAGGGACAAGGTGGTAAAGATTACACTAATATTTGTATCGCAAATCAT 6514 | || |||| || || ||| | || || | ||| | || || |||||| Sbjct 30893 ACTTCGAATGGTCAAGGGTTAGATGGATATGAATATA-TAACA-----ATTGCTAATCAT 30840 Query 6515 ATTGACTATGAGAAATGGAACAACCATCAAAGAAAAGCTGCAACTGATCCAGTTTTCAAG 6574 ||| | ||||| || |||||||| ||||||||| | | || | |||| ||||||| Sbjct 30839 ATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACA 30780 Query 6575 GTCATGGGAGAGTTCTTAGGATATCCCAACTTATTCACAAGAACTCACGAATTCTTTCAA 6634 ||||||||| | || ||||| ||||| || || || | |||| || |||||||| ||| Sbjct 30779 GTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAA 30720 Query 6635 GAAAGTCTAATTTACTACAATGGACGACCAGATTTGATGCGTGTCAACAAAGACAGCTT- 6693 ||| ||||||| ||||| |||| ||| | ||| || | ||| | || Sbjct 30719 TCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGTTATAGAAGCTCGTTTA 30660 Query 6694 ---AACAAATGCAACAAATCAA-ATAGTATGTTGGGAAGGTCAAGAAGGTGGATTAGAAG 6749 |||||| | | || || | || || ||| | ||||||| ||| ||| |||| | Sbjct 30659 GAAAACAAA--GACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGG 30602 Query 6750 GATTGAGACAAAAGGGATGGACAACAGTAGGATTATTGATGATAAGACGAGAGGCTAGAG 6809 | |||||||||| ||||| | | || |||| | | || | | |||| | || || Sbjct 30601 GGCTGAGACAAAAAGGATGAAGTATCGT-TTATTA-TAAACATTAAAAGAGAAGGTAAAG 30544 Query 6810 TTCGAAACACAACGGTCAAAATTTTAGCACAAGGAGATAATCAAGTGATTTGCACTCAAT 6869 || ||| || | | | || || || ||||||||||||||||| | || ||||||| Sbjct 30543 TTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAAT 30484 Query 6870 ACAAA-TTAAGACCATACCAAAATGAGCAA-GAGTTAGGTGGAAATTTAC-AAGA--TAT 6924 | ||| | ||| |||| | | ||||| || ||| || | | | | |||| ||| Sbjct 30483 ATAAACTGCAGAAGATACGATCA--AGCAATGAACTAGATGAATGTATCCAAAGAATTAT 30426 Query 6925 CTGGTATAATAATCATTCCATTATGAATGCAATACAGAATGGAACCAATAAACTAGGCTT 6984 | | || ||| | || |||| | ||| | || ||||| ||| ||| || || Sbjct 30425 ATCAAACAACAATAA---AATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGGATT 30369 Query 6985 AATTATTAATGAGGATGAAACTATACAATCAGCTGATTATTTAAATTATGGAAAGATACC 7044 | |||||| | |||||||| || | ||||| |||||||| |||||||| ||| | || Sbjct 30368 GTTAATTAATCAAGATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAGGTTCC 30309 Query 7045 AGTTTTT 7051 ||||| Sbjct 30308 GATTTTT 30302 Score = 102 bits (112), Expect = 6e-18 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 7316 TATAAAATCTTATCATTGTATTTAGATCCTTCATTGGGTGGTGCTTGTGGAACATCATTA 7375 |||| ||| ||| ||| ||||||||||| || ||||| || || |||| ||| || Sbjct 30026 TATAGAATTTTAGTATTATATTTAGATCCCTCTTTGGGCGGCATCTGCGGAATGTCACTA 29967 Query 7376 ACAAGATTTTTGACCAGAGCATTTCCTGATCCTGTTACAGAGAGTTTATCATTCTGGAAA 7435 || | ||||| | ||||||||||||||||||||| || || ||||||||||| ||| || Sbjct 29966 ACTCGTTTTTTAATCAGAGCATTTCCTGATCCTGTAACTGAAAGTTTATCATTTTGGCAA 29907 Query 7436 G 7436 | Sbjct 29906 G 29906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35411491193988