Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_031302.1
Length=11370
Score E
Sequences producing significant alignments: (Bits) Value
seq1802 199 3e-47
>seq1802
Length=132586
Score = 199 bits (220), Expect = 3e-47
Identities = 587/883 (66%), Gaps = 20/883 (2%)
Strand=Plus/Minus
Query 5905 TTTACGGATCCTTCAGACATTGGGGGCATCCATATATCGATTATTTTGCTGGACTTCAAA 5964
|||||||||| || ||||||||||||||||| | | | || ||| | ||||| |||
Sbjct 31595 TTTACGGATCATTTAGACATTGGGGGCATCCGTTTCTTGACTATCTACAAGGACTCAAAA 31536
Query 5965 AGCTATATGAGCAGGTCACTCTACCCAAACAGATCGACAAAAAGTATGCAGAGTTACTTG 6024
|| || |||| || ||| || ||| ||| || || ||||| || | | |
Sbjct 31535 AGTTACATGAACAAACAACTTTAAAGAAAACGATTGATCGAAGATATGCGCAGGCATTAG 31476
Query 6025 CAAGTGATCTGGCATTTCTTGTAATCAAAGATCAATTTAAAACaaaaaaaTGGTGGCCGG 6084
||||||| | ||| | |||| | || ||||||| | | ||| || ||| | |
Sbjct 31475 CAAGTGACTTAGCACATATTGTGTTGAAGAATCAATTCGACAAAAAGAAGATTTGGTCAG 31416
Query 6085 TTGAT-CCAAACTCACTGGATAAAGATCATCCTTTA-AGGAATTATATTGAAAACAATAC 6142
|||| |||| || | || |||||||| ||| || | || | | ||| | |||||
Sbjct 31415 TTGAAACCAATCT-ATTGCGAAAAGATCACCCTCTATATGACTCA-ATTACTCAAAATAC 31358
Query 6143 CTGGCCTAATAACAGTGTCA--TCAATAACTTTGGACCTTATTGGCACAAACTTCCACTA 6200
||||||| | || | ||| ||| ||||||| | | ||||| | ||||| |
Sbjct 31357 ATGGCCTACTC-CATT-TCAGATCAGAGACTTTGGGGATCAATGGCATACTCTTCCTTTG 31300
Query 6201 ATTAAGTGTTTTGAAATCCCTGATGTTGTTGACCCTTCCATAATCTACTCAGATAAAAGT 6260
| ||||||||||| ||||| ||||| | || ||| ||||||| | ||||||||
Sbjct 31299 AAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTAATCTATGCTGATAAAAGC 31240
Query 6261 CACTCATTGACCAGGTCAGAAATGAAGGCGTTCTTAGCCGCACATCCCAATTCATCTATT 6320
|| ||| | || |||| ||| | | || | |||| ||| | ||
Sbjct 31239 CATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAATATCCGAATATTCCGATC 31180
Query 6321 CCATCTCACAAAGTTCTTTCATCACTACTATCCA-ACCCCAGCACCA-ACTGGCCGATCT 6378
|| || | || || || ||| |||| | | || ||| || | ||| | ||
Sbjct 31179 CCGTCAAAGAAGGTACTAGAG--ACTTTTATCAACAGTCCCGCAACAGAATGGAAAACCT 31122
Query 6379 TCTTAGACAGAG-TAAACAAACACGGAATTTCATTAGACAATCTTATTATAGGGTTAAAA 6437
| || || |||| | || | || || | || ||||| |||| || |||
Sbjct 31121 TTTT-GAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCTTGTTATCGGATTACGG 31063
Query 6438 GAAAAGGAGCGCGAACTGAAAATTGGAGGCAGATTCTTTGCCTTGATGTCCTGGGAAATA 6497
| |||||||| || | |||| ||| ||||| ||||| | ||||||||| || ||
Sbjct 31062 GGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTATGTCCTGGAAATTA 31003
Query 6498 AGGGATTATTTTGTAATGACTGAGTACTTGATTAAAACACACTTTGTTCCTCTATTTGAT 6557
|| |||||||| ||||| || | || ||||||||| || ||||| || | |||
Sbjct 31002 AGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTTGTGCCATTGTTTTCG 30945
Query 6558 GGACTCACAATGGCAGATGACTTAACAACGGTAATCGGGAAAATTCTTCGAAACACGGAA 6617
||| | || |||||||||||| | | || ||| | ||| || || || || |||
Sbjct 30944 GGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATG-TTAGATACTTCGAA 30886
Query 6618 -GGACAAGGAGATACATCC-TATGAAAATGTGACTTTTGCTGATCATATTGATTATGAAA 6675
|| ||||| | || || |||||| || | || ||||| |||||||| |||||||||
Sbjct 30885 TGGTCAAGG-GTTAGATGGATATGAATATATAACAATTGCTAATCATATTAATTATGAAA 30827
Query 6676 AATGGAATAATCACCAAAGAGCAGAGGGAAACAACCCTACCTTCAGGGTTATGGGTCAAT 6735
| ||||| ||||| ||||||| || | ||||| ||| |||| || ||||| ||||
Sbjct 30826 AGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACAGTCATGGGACAAT 30767
Query 6736 TTTTAGGGTACCCAAATTTGATTGAAAGAACACATGAAATCTT 6778
|||||||||| || |||||||| |||| |||||| ||||
Sbjct 30766 TTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTT 30724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 36265821016776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |