Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_031302.1 Length=11370 Score E Sequences producing significant alignments: (Bits) Value seq1802 199 3e-47 >seq1802 Length=132586 Score = 199 bits (220), Expect = 3e-47 Identities = 587/883 (66%), Gaps = 20/883 (2%) Strand=Plus/Minus Query 5905 TTTACGGATCCTTCAGACATTGGGGGCATCCATATATCGATTATTTTGCTGGACTTCAAA 5964 |||||||||| || ||||||||||||||||| | | | || ||| | ||||| ||| Sbjct 31595 TTTACGGATCATTTAGACATTGGGGGCATCCGTTTCTTGACTATCTACAAGGACTCAAAA 31536 Query 5965 AGCTATATGAGCAGGTCACTCTACCCAAACAGATCGACAAAAAGTATGCAGAGTTACTTG 6024 || || |||| || ||| || ||| ||| || || ||||| || | | | Sbjct 31535 AGTTACATGAACAAACAACTTTAAAGAAAACGATTGATCGAAGATATGCGCAGGCATTAG 31476 Query 6025 CAAGTGATCTGGCATTTCTTGTAATCAAAGATCAATTTAAAACaaaaaaaTGGTGGCCGG 6084 ||||||| | ||| | |||| | || ||||||| | | ||| || ||| | | Sbjct 31475 CAAGTGACTTAGCACATATTGTGTTGAAGAATCAATTCGACAAAAAGAAGATTTGGTCAG 31416 Query 6085 TTGAT-CCAAACTCACTGGATAAAGATCATCCTTTA-AGGAATTATATTGAAAACAATAC 6142 |||| |||| || | || |||||||| ||| || | || | | ||| | ||||| Sbjct 31415 TTGAAACCAATCT-ATTGCGAAAAGATCACCCTCTATATGACTCA-ATTACTCAAAATAC 31358 Query 6143 CTGGCCTAATAACAGTGTCA--TCAATAACTTTGGACCTTATTGGCACAAACTTCCACTA 6200 ||||||| | || | ||| ||| ||||||| | | ||||| | ||||| | Sbjct 31357 ATGGCCTACTC-CATT-TCAGATCAGAGACTTTGGGGATCAATGGCATACTCTTCCTTTG 31300 Query 6201 ATTAAGTGTTTTGAAATCCCTGATGTTGTTGACCCTTCCATAATCTACTCAGATAAAAGT 6260 | ||||||||||| ||||| ||||| | || ||| ||||||| | |||||||| Sbjct 31299 AAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTAATCTATGCTGATAAAAGC 31240 Query 6261 CACTCATTGACCAGGTCAGAAATGAAGGCGTTCTTAGCCGCACATCCCAATTCATCTATT 6320 || ||| | || |||| ||| | | || | |||| ||| | || Sbjct 31239 CATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAATATCCGAATATTCCGATC 31180 Query 6321 CCATCTCACAAAGTTCTTTCATCACTACTATCCA-ACCCCAGCACCA-ACTGGCCGATCT 6378 || || | || || || ||| |||| | | || ||| || | ||| | || Sbjct 31179 CCGTCAAAGAAGGTACTAGAG--ACTTTTATCAACAGTCCCGCAACAGAATGGAAAACCT 31122 Query 6379 TCTTAGACAGAG-TAAACAAACACGGAATTTCATTAGACAATCTTATTATAGGGTTAAAA 6437 | || || |||| | || | || || | || ||||| |||| || ||| Sbjct 31121 TTTT-GAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCTTGTTATCGGATTACGG 31063 Query 6438 GAAAAGGAGCGCGAACTGAAAATTGGAGGCAGATTCTTTGCCTTGATGTCCTGGGAAATA 6497 | |||||||| || | |||| ||| ||||| ||||| | ||||||||| || || Sbjct 31062 GGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTATGTCCTGGAAATTA 31003 Query 6498 AGGGATTATTTTGTAATGACTGAGTACTTGATTAAAACACACTTTGTTCCTCTATTTGAT 6557 || |||||||| ||||| || | || ||||||||| || ||||| || | ||| Sbjct 31002 AGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTTGTGCCATTGTTTTCG 30945 Query 6558 GGACTCACAATGGCAGATGACTTAACAACGGTAATCGGGAAAATTCTTCGAAACACGGAA 6617 ||| | || |||||||||||| | | || ||| | ||| || || || || ||| Sbjct 30944 GGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATG-TTAGATACTTCGAA 30886 Query 6618 -GGACAAGGAGATACATCC-TATGAAAATGTGACTTTTGCTGATCATATTGATTATGAAA 6675 || ||||| | || || |||||| || | || ||||| |||||||| ||||||||| Sbjct 30885 TGGTCAAGG-GTTAGATGGATATGAATATATAACAATTGCTAATCATATTAATTATGAAA 30827 Query 6676 AATGGAATAATCACCAAAGAGCAGAGGGAAACAACCCTACCTTCAGGGTTATGGGTCAAT 6735 | ||||| ||||| ||||||| || | ||||| ||| |||| || ||||| |||| Sbjct 30826 AGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACAGTCATGGGACAAT 30767 Query 6736 TTTTAGGGTACCCAAATTTGATTGAAAGAACACATGAAATCTT 6778 |||||||||| || |||||||| |||| |||||| |||| Sbjct 30766 TTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTT 30724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36265821016776