Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_031305.1 Length=10833 Score E Sequences producing significant alignments: (Bits) Value seq1802 98.7 7e-17 >seq1802 Length=132586 Score = 98.7 bits (108), Expect = 7e-17 Identities = 493/772 (64%), Gaps = 25/772 (3%) Strand=Plus/Minus Query 5741 GATTTCGGAGACCACTGGCACGAACTTCCACTCACCAAGTGTTTTGAAATCCCAGATGTG 5800 || || || || || ||||| ||||| | | ||||||||||| ||||| |||||| Sbjct 31332 GACTTTGGGGATCAATGGCATACTCTTCCTTTGAAAAAGTGTTTTGAGATCCCCGATGTG 31273 Query 5801 ATTGATCCAAGCTTACTTTATTCAGATAAAAGCCACTCCCTACCCCGGGCAGAGGTCATC 5860 || ||||| || ||| | ||| | ||||||||||| || | | ||| | | Sbjct 31272 ATCGATCCTAGTTTAATCTATGCTGATAAAAGCCATTCAATCACTTAATCAGCAATTCTA 31213 Query 5861 CAATTTGTCAAAAGTGGGAAGAAGGGCCCCATTCCTTCTCTGAAGGTTTTGGACACTCTC 5920 | ||| | || ||| || || || || |||||| | || ||| | Sbjct 31212 GAGCATGTAAGAAAATATCCGAATATTCCGATCCCGTCAAAGAAGGTACTAGAGACTTTT 31153 Query 5921 CTTAAGACCTCTGCCACAAACTGGCCAGAGTTTCTTCAAAGAG-TGAATGATGACGGGAT 5979 | || | | || ||| | ||| | ||| || |||||| | |||||| | || | Sbjct 31152 ATCAACAGTCCCGCAACAGAATGGAAAACCTTT-TTGAAAGAGGTCAATGATCATGGTTT 31094 Query 5980 A--CCTAGAGATCAGCTGGTTATCGGACTGAAAGGGAAGGAACGGGAGTTGAAGAAAAAC 6037 | || || || | || ||||||||| | |||||||| || | | || | || Sbjct 31093 AGACCCGGA-AT-ATCTTGTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATA 31036 Query 6038 GGGCGCTTCTTCTCATTGATGTCATGGATGTTGCGAGAATATTTCGTGGTCACTGAGTAC 6097 || | || || | | ||||| |||| || |||| |||||||| | || | || Sbjct 31035 GGTAGATTTTTTGCTCTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAAC--AATAT 30978 Query 6098 CTTATCAAGCTTCACTATGTTCCCCTTTTCTCAGGCCTGACTATGGCGGATGATCTAACC 6157 | || || | || | ||| || | || || || |||||||||| ||||| || | Sbjct 30977 TTGATTAAAGTGCATTTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAAT 30918 Query 6158 ACAGTCATCACCAAATTATTGGACCGGACCCAAGGACAGGGAGGTACATCG-TATGAAAA 6216 || || | | || | || || | | || || || | || || | |||||| | Sbjct 30917 ACTGTATTAAAGAAGATGTTAGATACTTCGAATGGTCAAGG-GTTAGATGGATATGAATA 30859 Query 6217 TATCTGCATCGCCAATCACATTGATTATGAGAAATGGAACAATCATCAACGTCAGGAGGC 6276 ||| || || ||||| ||| ||||||| || ||||||||||||||| | | || || Sbjct 30858 TATAACAATTGCTAATCATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGC 30799 Query 6277 CACTGCGCCAGTGTTCAGGGTGATGGGACAATTCCTTGGATATCCAAACCTCATTGCGAG 6336 | || || |||| || ||||||||||| | || ||||| || | || | | Sbjct 30798 GAACAATCCTGTTTTCACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCG 30739 Query 6337 GACCCATGAGTTCTTTCAACAAAGCTTAATATACTACAATGGTAGGCCCGATCTCATGAT 6396 |||||||| ||||| ||| || ||||| || ||||| ||| || ||||| |||| Sbjct 30738 AACCCATGAATTCTTCCAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGAC 30679 Query 6397 TG-TGTCCAAGGATTCTCTT--------AAGTCCCGTGGCCAACATTTGGTTTGTTGGGA 6447 | | | ||| || || ||| ||| | || | |||||| ||| | Sbjct 30678 AGTTATAGAAG--CTCGTTTAGAAAACAAAGACCCTATG--AAGA--GGGTTTGCTGGAA 30625 Query 6448 GGGCCAGGCAGGCGGACTGGAAGGTTTGCGACAAAAAGGATGGAGTGTCCTT 6499 || || ||||| ||||| || || || ||||||||||||| ||| || || Sbjct 30624 TGGTCAAGCAGGAGGACTAGAGGGGCTGAGACAAAAAGGATGAAGTATCGTT 30573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34547562159708