Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_031690.1 Length=11308 Score E Sequences producing significant alignments: (Bits) Value seq1802 237 1e-58 >seq1802 Length=132586 Score = 237 bits (262), Expect = 1e-58 Identities = 1088/1693 (64%), Gaps = 52/1693 (3%) Strand=Plus/Plus Query 3721 TTCAGTGACAGGATCTGGAAAGCCTCTTATTAGGAATCGTGTTAGAGATGTTCCTGAGAT 3780 |||||| |||||||| ||||| |||| |||| || || ||||| || |||| |||| Sbjct 29925 TTCAGTTACAGGATCAGGAAATGCTCTGATTAAAAAACGAGTTAGTGACATTCCGCAGAT 29984 Query 3781 TCCGCCAAGAGATGGATCCAAATACAATGCCAAGCATTTGTATT--CGATGGA------T 3832 ||||| | ||| ||||| ||||| ||| | || | | |||| |||| || | Sbjct 29985 GCCGCCCAAAGAGGGATCTAAATATAATACTAAAATTCTATATTTTCGATTGAGAAAGTT 30044 Query 3833 CTGTTAA--AATTAGGACCTAATG--TTGTTCGGGAGATAGGACCCTTGATGGCTGGATT 3888 |||| || | || | | || |||| |||| | | || || ||||| || Sbjct 30045 TTGTTGTTCAAGTTGGGTCAAGTGAATTGTC--GGAGCTG----CTTTAATTGCTGGGTT 30098 Query 3889 ATGTAATTCTAAGAGATTTCGGCAGAAGTTGCCCATAAAATTGTAGTGTGCCATTGGTTC 3948 ||| | ||||||| | | || || || | |||||| || || |||| || Sbjct 30099 ATGAAGATCTAAGACTTCTAAAACTAAATTTCCTAGAAAATTATAATGGATAATTGAATC 30158 Query 3949 CAAAGGTGAGTCCGAGAAGTGGGCAACTGTGAGTGCATTGGATCCGACAGTGGAGAGAAT 4008 |||||| || || || ||||| | || | | ||| || || || | |||| || Sbjct 30159 CAAAGGAGATTCTGAAAAGTGCCCTACAGATAATGCGTTAGAAGATACCATAGAGATTAT 30218 Query 4009 GTTTGCTAGCGTTGGCAATTGGTCATTGGTTACACAAGTTATCCGAGACCAACGTTTGCT 4068 || || || || ||||| || || | | ||| | || || ||||| | ||| Sbjct 30219 ATTACTTATTGTAGGTAATTGATCGTTAGACATACATGCTACTCG-GACCATCTTTTTGA 30277 Query 4069 TTCTAGACACTGAAAATTCCCTCGGAACACAGGAACCTTCCCATA-TACAAGGTATTCAG 4127 ||| | | | | ||||| || || | |||||||||||||| | ||| || || | Sbjct 30278 TTCCATCCCTTTTACTTTCCCACGAAAAATCGGAACCTTCCCATAATTCAAA-TAATCCG 30336 Query 4128 CTGATTGAAGAGTCTCATCCCGATTGATAATCAGTCCCAATTTCAAGGCTCCTTGCTCTA 4187 |||| | | || ||||| |||| || | || ||| | | | ||||| |||| Sbjct 30337 CTGACTTCATGGTTTCATCTTGATTAATTAACAATCCGAGTCGATTAGTTCCTTTTTCTA 30396 Query 4188 TATGGTGGATCAATTTGTTGTTGTTTTCCCAAATTCGTTCTAAGGACTGAACCAGTTCTT 4247 | | || | ||| ||||||||| ||||| || | | | | | ||||| | Sbjct 30397 TGTTACTCATTATTTTATTGTTGTTTGATATAATTCTTTGGATACATTCATCTAGTTCAT 30456 Query 4248 CGTGATTCCT-GTATTTT-TGCACTCGATAATTTGTGCAGACCACCTGATTGTCCCCTTG 4305 || || | |||| || |||| | ||| | || ||||| || ||||| || ||||| Sbjct 30457 --TGCTTGATCGTATCTTCTGCAGTTTATATTGAGTACAGACAACTTGATTATCTCCTTG 30514 Query 4306 AGCCAGAACTTTAACAAATGTATTGTTGCTTTTGGATGCTCTGTTGATGGCGAGAAGGTT 4365 |||| | ||| ||||| | ||| | |||| || ||| | || | Sbjct 30515 CGCCAAGATACTAAGTCTCGTATTTTCAACTTTACCTTCTCTTTTAATGTTTATAA--TA 30572 Query 4366 TACAATACTCCATCCCTTTTGGCGCAATCCCTCTAATCCCCCCAATTGACCTTGCCAGCA 4425 || ||||| ||||| ||||| | || ||||||| ||| || |||||| | |||||| Sbjct 30573 AACGATACTTCATCCTTTTTGTCTCAGCCCCTCTAGTCCTCCTGCTTGACCATTCCAGCA 30632 Query 4426 ATACAGTTGTCCCGG----TTTATTGACGATTCTTCCATC-ATGACAGCGCAGTTGATCA 4480 | || | || | ||| || | | | | || || || | || | ||||| Sbjct 30633 A-ACCCTCTTCATAGGGTCTTTGTTTTCTAAACGAGCTTCTATAACTGT-CATTAGATCA 30690 Query 4481 GGTCTATCCAGGTAATATATCAGTGATTTTTCAAAGAATTCATGAGTTCGAGATATTAGT 4540 ||||||| |||||| || | || ||||||||||| |||||||| || | Sbjct 30691 GGTCTATTGTTGTAATAAATTAAACTCGATTGGAAGAATTCATGGGTTCGAGAGATCAAA 30750 Query 4541 TTTGGATACCCAAGAAACTTTCCCATCACATCAAATACAGGATTATTGGCTTTGGCTCGT 4600 || |||||||| | ||| | |||||| || || |||||||| || |||| ||| | Sbjct 30751 TTAGGATACCCTAAAAATTGTCCCATGACTGTGAAAACAGGATTGTTCGCTTCATCTCTT 30810 Query 4601 TGATGGTTATTCCATTTGCTATAATCAAAGTGATTGGCGATACAGATGTTCTCGTACCCT 4660 ||||| || ||||| || ||||| || ||||| || || || | || || || Sbjct 30811 TGATGATTGTTCCACTTTTCATAATTAATATGATTAGCAATTGTTATATATTCATATCCA 30870 Query 4661 TCACTTCCTTGACCTGAAGTTGTATCCATCATTTTCTTTATGACGGTAGTCATATCATCT 4720 || |||||||| | ||||| | ||| ||||||| || ||| | | |||||| Sbjct 30871 TCTAACCCTTGACCATTCGAAGTATCTAACATCTTCTTTAATACAGTATTAAGGTCATCT 30930 Query 4721 GCCATAGTTAGTCCTTTAAACAATGGAACAAAGTGAGTCTTGATTAGGTGTTCTGTTATT 4780 |||||||| | ||| ||||||||| ||||| || || || | | | ||||||| Sbjct 30931 GCCATAGTCAATCCCGAAAACAATGGCACAAAATGCACTTTAATCAAATAT--TGTTATT 30988 Query 4781 ACAAAATACTCTCGTAAAGCCCAGGTCAATAGAGCATAAAATCTTCCTCCAATCTTGATC 4840 || ||||| |||| ||| ||||| || |||||| ||||||| ||| | || || Sbjct 30989 ACGAAATAATCTCTTAATTTCCAGGACATAAGAGCAAAAAATCTACCTATTCTTTTAATT 31048 Query 4841 TCTCGCTCTTTTCCTTTAAGTCCTATGATGAGATCCTCAAGAGTTAGTCCATTGTCATTG 4900 | |||||| || || | ||| || | |||| || | || |||| |||||| Sbjct 31049 TTTCGCTCCTTCCCCCGTAATCCGATAACAAGATATTCCGGGTCTAAACCATGATCATTG 31108 Query 4901 ACTTCTTGCAGGAACTTTTTCCACTCCGTTGCAGGTTTTTGGAGAAATGATTCCAGAACT 4960 || |||| || || ||||||| || ||||| || | | || ||| | || || || Sbjct 31109 ACCTCTTTCAAAAAGGTTTTCCATTCTGTTGCGGGACTGTTGATAAAAGTCTCTAGTACC 31168 Query 4961 TTATTTGTTGGGATTGG-GTCATGGGAACGTGTCAGA-ATGTGTCTATAGACCT-CAGAG 5017 || |||| ||||| || | | ||| | || | ||| || |||| | | || Sbjct 31169 TTCTTTGACGGGATCGGAATATTCGGATATTTTCTTACATG---CTCTAGAATTGCTGAT 31225 Query 5018 TATTGCATAGAATGGCTCTTGTCACTATAGATAACGGATGGATCAATGACATCGGGAATC 5077 || || |||||||| || ||| |||||| | ||||| || |||||||| ||| Sbjct 31226 TAAGTGATTGAATGGCTTTTATCAGCATAGATTAAACTAGGATCGATCACATCGGGGATC 31285 Query 5078 TCCATACATTTTTGAAGCGGTAATCTATGCCAGTTGTCTCCAAAATCGATAATCTTCTTT 5137 || | ||| |||| | || | ||||||| | || ||||| || | |||| | Sbjct 31286 TCAAAACACTTTTTCAAAGGAAGAGTATGCCATTGATCCCCAAAGTCTCTGATCTGAAAT 31345 Query 5138 GGTGTTGGCCACG--TTTTGTCTCGGACATGTC-GATAAAGGG-GATGTTTCCGATCAAG 5193 || || ||||| | ||||| | | ||| ||| |||| ||| ||| || ||| Sbjct 31346 GGAGTAGGCCATGTATTTTGAGTAATTGA-GTCATATAGAGGGTGATCTTTTCG--CAA- 31401 Query 5194 TTGGTCTATGTCCACAAACCACTTTTTCTTCTCCTTGAATTCCTTTTGGAGAACCATAAA 5253 | | | | || || |||| | ||||| | | ||||| || | | || ||| Sbjct 31402 TAGATTGGTTTCAACTGACCAAATCTTCTTTTTGTCGAATTGATTCTTCAACACAATATG 31461 Query 5254 GGCTAAGTCACTGGCGAGTGCATTGGCGTA-CTTCTCGTCAATCGTTTTTGGCATATTTA 5312 ||||||||||| || | ||| | || || |||| ||||||||||| | | || Sbjct 31462 TGCTAAGTCACTTGCTAATGCCTGCGCATATCTTC-GATCAATCGTTTTCTTTAAAGTTG 31520 Query 5313 CCTGAGCCTCTAGATTTCTTAGGCCTTCCTGATAATCCAGATAAGGATGGCCCCAATGTC 5372 || | | || ||| | || |||| |||| || ||| | ||||| |||||||||| Sbjct 31521 TTTGTTCATGTAACTTTTTGAGTCCTTGTAGATAGTCAAGAAACGGATGCCCCCAATGTC 31580 Query 5373 TGAAGGACCCATA 5385 | || || || || Sbjct 31581 TAAATGATCCGTA 31593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36067437312608