Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_031691.1 Length=11238 Score E Sequences producing significant alignments: (Bits) Value seq1802 351 7e-93 >seq1802 Length=132586 Score = 351 bits (388), Expect = 7e-93 Identities = 711/1043 (68%), Gaps = 32/1043 (3%) Strand=Plus/Plus Query 3838 TTTGATCGCAGGGTTATGTCGATCCAATAAATTGGTTACAAAATTGCCAAGGAAGTTATA 3897 ||| || || |||||||| |||| || | | || ||||| || || || ||||| Sbjct 30084 TTTAATTGCTGGGTTATGAAGATCTAAGACTTCTAAAACTAAATTTCCTAGAAAATTATA 30143 Query 3898 ATGGATCATCGAATTGATAGGACTTTCTGAATAATGCGATACTGTCAATGCATTGGAAGA 3957 |||||| || |||| | |||| ||||||| | ||| ||| | ||||| || ||||| Sbjct 30144 ATGGATAATTGAATCCAAAGGAGATTCTGAAAAGTGCCCTACAGATAATGCGTTAGAAGA 30203 Query 3958 TACCGTGGACAATATGTTCCCTAATCCGGGCAATTGATCATTGGATACACATGTAACTCG 4017 |||| | || | ||| || | || | || |||||||| || || | ||||| ||||| Sbjct 30204 TACCATAGAGATTATATTACTTATTGTAGGTAATTGATCGTTAGACATACATGCTACTCG 30263 Query 4018 TGACCATCTTTTGGTTTCCAGTCCTCTTATGTTACCTCGAAACACTGGAACTTTGCCGTA 4077 ||||||||||| | ||||| ||| ||| || || ||||| | ||||| || || || Sbjct 30264 -GACCATCTTTTTGATTCCATCCCTTTTACTTTCCCACGAAAAATCGGAACCTTCCCATA 30322 Query 4078 ACTTAAGAAATCAGCAGATCTCATGGTCTCATCCCTATTAATTATTAGTCCGAGTTTCCT 4137 | | || |||| || || ||||||| ||||| |||||||| | ||||||| | Sbjct 30323 ATTCAAATAATCCGCTGACTTCATGGTTTCATCTTGATTAATTAACAATCCGAGTCGATT 30382 Query 4138 CGTACCTTCCTCTATTTCTCTCATGATATCATCATTATTCCTTGATATA--TCATT-GAG 4194 || |||| ||||| | ||||| || | ||| || |||||||| || || || Sbjct 30383 AGTTCCTTTTTCTATGTTACTCATTAT---TTTATTGTTGTTTGATATAATTCTTTGGAT 30439 Query 4195 ACACTGCTGAAGTTC-TTGATCATTTCTAGTCTTATGTAATGAGTATTGTGTACATATGA 4253 ||| | | ||||| ||| | | || |||| || | | ||||| ||||| | | Sbjct 30440 ACATTCATCTAGTTCATTGCTTGATCGTA-TCTTCTGCAGTTTATATTGAGTACAGACAA 30498 Query 4254 CTTGATTGTCACCCTGTGCCAATATTTGAACCCTGGT-GTTACGTCTGATGCTGGCTCGA 4312 ||||||| || || || ||||| || || || || || | || | | ||| Sbjct 30499 CTTGATTATCTCCTTGCGCCAAGATACTAAGTCTCGTATTTTCAACT-TTACCTTCTCTT 30557 Query 4313 CGAATAATTAGCAGGTTGGTTATACTCCATCCTTTTTGCCTAAGCCCCTCTAGTCCACCA 4372 ||| ||| | | ||||| ||||||||||| || |||||||||||||| || Sbjct 30558 TTAATGTTTATAA--TAAACGATACTTCATCCTTTTTGTCTCAGCCCCTCTAGTCCTCCT 30615 Query 4373 GATTGCCCCGACCAGCAGACTCTAT-------GTCCCCTTTTATTAACTATCTGTCCATC 4425 | ||| || |||||| || || | ||| ||| || ||| | | || Sbjct 30616 GCTTGACCATTCCAGCAAACCCTCTTCATAGGGTC----TTTGTTTTCTAAACGAGCTTC 30671 Query 4426 GATAATCTCCATCAGATCTGGTCTTTGATTGTAATAAATCAGACTCTGTTCAAAGAATTC 4485 |||| ||| ||||| ||||| | ||||||||||| | |||| || |||||||| Sbjct 30672 TATAACTGTCATTAGATCAGGTCTATTGTTGTAATAAATTAAACTCGATTGGAAGAATTC 30731 Query 4486 ATGGGTTCTAGATATTAAGTTGGGGTATCCCAAAAATTGTCCCATTACCTTGAATGTGGG 4545 |||||||| ||| || || || || || || |||||||||||||| || |||| || Sbjct 30732 ATGGGTTCGAGAGATCAAATTAGGATACCCTAAAAATTGTCCCATGACTGTGAAAACAGG 30791 Query 4546 ATTATTGGCTGCTCCCCTCTGATGATTGTTCCATTTTTCATAATCTACATGGTTGGCAAA 4605 ||| || ||| | | || |||||||||||||| |||||||||| | ||| || |||| Sbjct 30792 ATTGTTCGCTTCATCTCTTTGATGATTGTTCCACTTTTCATAATTAATATGATTAGCAAT 30851 Query 4606 GCTTACATGATCATAATTATCCGTACCTTGACCATATGTGTTGTCCATTAATTTTTTAGT 4665 ||| || ||||| ||| |||||||||| | | || ||| | || | Sbjct 30852 TGTTATATATTCATATCCATCTAACCCTTGACCATTCGAAGTATC---TAACATCTTCTT 30908 Query 4666 CAAAACGG---TGGAGTTATCTGCCATGGTTAGACCTTTAAATAATGGGACAAAATGCTT 4722 || || | | || ||||||||| || | || ||| ||||| ||||||||| Sbjct 30909 TAATACAGTATTAAGGTCATCTGCCATAGTCAATCCCGAAAACAATGGCACAAAATGCAC 30968 Query 4723 CTTGATCAGATATTCTGTTATTACGAAGTATTCTCTCAACTCCCAGGACATGAGCGCAAA 4782 || |||| |||| |||||||||||| || ||||| || | ||||||||| || ||||| Sbjct 30969 TTTAATCAAATAT--TGTTATTACGAAATAATCTCTTAATTTCCAGGACATAAGAGCAAA 31026 Query 4783 AAATCTTCCTTTTATTTTCAGTTCACGCTCTTTGCCTTTAAGTCCGATAAGAAGTTTCTC 4842 |||||| ||| || |||| | || ||||| || || | |||||||| ||| | || Sbjct 31027 AAATCTACCTATTCTTTTAATTTTTCGCTCCTTCCCCCGTAATCCGATAACAAGATATTC 31086 Query 4843 CTTATCCAGCCCCTGGTCATTGA 4865 | || | || || ||||||| Sbjct 31087 CGGGTCTAAACCATGATCATTGA 31109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35843455711128