Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_028241.1 Length=14478 Score E Sequences producing significant alignments: (Bits) Value seq10207 96.9 3e-16 seq4993 93.3 4e-15 >seq10207 Length=801 Score = 96.9 bits (106), Expect = 3e-16 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 9631 TTGGTAATTGGCCTTAAAGGGAAAGAGAGGGAATTGAAAGAAGCCGGACGATTCTTTTCC 9690 |||||||| || || | |||| ||| || | ||| || |||||| || ||| | Sbjct 696 TTGGTAATAGGACTACGACTAAAAGCGAGAGAGCTAAAACTAGTCGGACGGTTTTTTGCT 637 Query 9691 TTAATGTCCTGGGAATTAAGGGAATATTTCGTTGTAACTGAATTACTGATTAAACAACAT 9750 | |||||||||| |||||| || || || ||| | || || |||||||||| || ||| Sbjct 636 CTCATGTCCTGGGCATTAAGAGAGTACTTTGTTATCACAGAGCTACTGATTAAGCACCAT 577 Query 9751 TATGTAAAGTTGTTCAAAGGTTTGACCATGGCAGATGATCTCCAAACTGTC 9801 | | | |||| ||||||| | ||||||||||||||| | | |||||| Sbjct 576 TTTTTCCCCTTGTGCAAAGGTCTAACCATGGCAGATGATAACAATACTGTC 526 >seq4993 Length=28616 Score = 93.3 bits (102), Expect = 4e-15 Identities = 258/391 (66%), Gaps = 6/391 (2%) Strand=Plus/Plus Query 9652 AAAGAGAGGGAATTGAAAGAAGCCGGACGATTCTTTTCCTTAATGTCCTGGGAATTAAGG 9711 ||||| || ||| |||| | ||| |||||||| |||||||||| ||| || | Sbjct 21489 AAAGAAAGAGAACTGAAGCTTGTCGGTAGATTCTTTGCCTTAATGTCTTGGACTTTGCGA 21548 Query 9712 GAATATTTCGTTGTAACTGAATTACTGATTAAACAACATTATGTAAAGTTGTTCAAAGGT 9771 |||||||| | | | || || | | ||||| | |||| ||| | | || || Sbjct 21549 GAATATTTTGGTATTACGGAGCTGTTAATTAAGAAGCATTTTGTCCCTCTCTGTAAGGGG 21608 Query 9772 TTGACCATGGCAGATGATCTCCAAACTGTCATAAAGAAAATGCTTGATACCTCACATGGT 9831 ||||| |||||||| ||| | | ||||| || || || ||| | | | ||| | || Sbjct 21609 TTGACTATGGCAGACGATTACAACACTGTAATTAACAAGATGTTGCAAGCTTCAGAAGGA 21668 Query 9832 CAGGGAACCCGTACATATGATGCCA--TCACCATTGCCAATAACATAGACTATGAAAAAT 9889 || | || | |||||| ||| | || || |||||| | |||||||| || | Sbjct 21669 CAAAGCACGGGAGAATATGA--CCAAGTTACTATAGCCAATCATGTAGACTATAGTAAGT 21726 Query 9890 GGAATAATTATCAGAGAATGGAATCAAACGGTCCTGTATTCAGAGTAATGGGTC-AATTC 9948 | || ||||||||||| | ||| | || | || || |||||||| ||||| | || Sbjct 21727 GAAACAATTATCAGAGGAAAGAAGCTAATGACCCAGTCTTCAGAGTTATGGGCCTGTTTG 21786 Query 9949 TTGGGATATCCTAATTTGATACTCAGGACCCATGAGTTTTTTCAGAAAAGTTTAATTTAT 10008 | |||| |||||| | | || |||||||||||| ||||| || | || Sbjct 21787 TCAGGAT-GGAGAATTTGTTCTGTCGAACTCATGAGTTTTTTGAGAAATCATTCTTCTAC 21845 Query 10009 TATAATCAAAGACCTGATTTGATGAGAGTAG 10039 ||| | ||||||||| | |||| | ||| Sbjct 21846 TATCGCGACAGACCTGATCTAATGATAATAG 21876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46192838196295