Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_031308.1 Length=2217 Score E Sequences producing significant alignments: (Bits) Value seq17588 338 9e-90 seq29 179 5e-42 seq7436 168 9e-39 >seq17588 Length=255762 Score = 338 bits (374), Expect = 9e-90 Identities = 491/692 (71%), Gaps = 21/692 (3%) Strand=Plus/Minus Query 770 ACTACAAAGGCGACATGA-TGAGATTTAAGATTGATGCTGCATACATAAGGACAAGGTAT 828 ||||||| | | ||| | |||| || || ||||| | ||||| ||| | ||||| ||| Sbjct 252270 ACTACAAGGACTACAAGGGTGAG-TTCAAAATTGACTCAGCATATATACGCACAAGATAT 252212 Query 829 CATCTTGTGTATTACACAAGTGAGTATGAGATCAAAACTAGCTACACTTCAAACTGTAAA 888 || | || ||||||||||| || ||||| | |||||| | ||||||||||||| Sbjct 252211 AATTTAGTTTATTACACAAGCGAATATGAAGTTAAAACTGTTCATCATTCAAACTGTAAA 252152 Query 889 GGGTCTGGCAGTTGCTGGTCAGGCGGTTGCAGAGATATAGGAGTTCATCCCAGATTGAGA 948 || | || |||| ||| || || ||| | ||| | ||||| ||| | | | Sbjct 252151 GGAGCAGGTGGTTGTTGGCAGGGGGGCTGCCGCGATGTTGGAGTCCATAAATCACTACAA 252092 Query 949 GCAATAGCCAACAGTAGCATAATGGGGTATGGGTGTGAAACTGATAATTTAGGGTGCGAC 1008 | | ||||||| || ||||| ||||| || || || |||||| ||| | || || || Sbjct 252091 GGAGTAGCCAATAGCAGCATCATGGGTTACGGATGCACAACTGACAATCTGGGTTGTGAT 252032 Query 1009 GATTGGTGCTTTATGAAGACGTCGTGCACCTGGTATAAATGGGATATTAAAAGTAAAGGT 1068 |||||||||||||||||||| || ||||| ||||| |||||||| || | ||||| | Sbjct 252031 GATTGGTGCTTTATGAAGACATCATGCACATGGTACAAATGGGACATACACAGTAAGAGG 251972 Query 1069 GTTTATGGTAAAGTTTATGAGAAGTCATCAGAGATATGGGAGGTCATTCTCAGGATTGAT 1128 | |||||||| ||||| ||| | | || ||| | |||||| Sbjct 251971 CTACTGGGTAAAGTCTATGAAAAGACCAAAAAG--------------TCTG-GTATTGAT 251927 Query 1129 TACCAGAACGTTACAACGAGGCATAAGGTTAACGTGAATAATCCCAGGGTCAATCTGGAT 1188 |||||||| || |||| || ||| || || || ||||| || ||||| || | ||| Sbjct 251926 TACCAGAATGTAACAATGA----TAAAGTCAATGTAAATAACCCTAGGGTTAACTTAGAT 251871 Query 1189 GGACTTATGGATGGTATACCAATATATATAACCAGTATCTCATCAGAAACTGATAATGTA 1248 || ||||||||||| ||||| ||| |||| || || ||||| || ||||| | | | || Sbjct 251870 GGCCTTATGGATGGAATACCTATACATATTACAAGCATCTCTTCTGAAACAGCCAGTATA 251811 Query 1249 CCAAATGGGATATTGGAGTACTTAGGTACAGGTTATGCTGTCAAAGCCTCTCAGATGAAT 1308 |||||||| || | || ||| ||| | |||||||||||| | || || || ||| Sbjct 251810 CCAAATGGTATCCTTGAATACCAGGGTGTTGCTTATGCTGTCAAGACATCCCATATCAAT 251751 Query 1309 ATGCCTGAGACAGATATAATTGGTGATTACCAAATAAGCCTTGACAAAGAGACGTATGCC 1368 |||||||||||||| ||||| || ||||| ||||| || || ||||| | || | | Sbjct 251750 ATGCCTGAGACAGACATAATAGGAGATTATCAAATCAGTCTAGACAAGAAAACTCAAACA 251691 Query 1369 TTCAATATGCATAATGTCAAATGTGAAACTGAATCTTGCAGAGCATTTTGCAATGCACCA 1428 ||||| ||| | || | ||||| ||| || ||||| ||||| |||||||| ||| Sbjct 251690 TTCAACGAGCACACAGTGAGGTGTGAGGTTGAGTCATGCAGGGCATTCTGCAATGCTCCA 251631 Query 1429 GAACCGAAGATGACAAGATTCATAAGGATGAT 1460 || || || ||||| |||| ||||||||||| Sbjct 251630 GAGCCTAAAATGACTCGATTTATAAGGATGAT 251599 Score = 95.1 bits (104), Expect = 2e-16 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 664 ACTCTTTTTATTAGATCTGATGGCAAAGTGTGTGATGACAAACAATGCATAAGCACATCT 723 ||||||| | ||||| || || ||||||||||||||||| ||||||||||||||||| Sbjct 253276 ACTCTTTGCA--AGATCGGACGGGAAAGTGTGTGATGACAAGCAATGCATAAGCACATCA 253219 Query 724 ATGTACCAGTTGCATCTACAATCTGGTTCTGTCGTATGCTTTAAAGACTACAAAGG 779 ||||| ||| |||| | | || || || || |||||||| |||||||| || Sbjct 253218 ATGTATCAGCTGCACTTGTTGACAGGGTCAGTTGTCTGCTTTAAGGACTACAAGGG 253163 >seq29 Length=79640 Score = 179 bits (198), Expect = 5e-42 Identities = 468/708 (66%), Gaps = 12/708 (2%) Strand=Plus/Minus Query 646 GCATTTGGCTGCGACAATACTCTTTTTATTAGATCTGATGGCAAAGTGTGTGATGACAAA 705 ||| | || || || || || || | ||| ||||| ||||| ||||| |||||| | Sbjct 30969 GCAATAGGGTGTGATAACACACTGTATATCAGATCAGATGGGAAAGTTTGTGAT----AG 30914 Query 706 CAATGCATAAGCACATCT----ATGTACCAGTTGCATCTACAATCTGGTTCTGTCGTATG 761 || || | ||||| || |||||| |||||| || | |||||| || || || Sbjct 30913 CACTGGCTGTGCACAGCTGTCCATGTACGAGTTGCCACTGATAAGTGGTTCAGTTGTGTG 30854 Query 762 CTTTAAAGACTACAAAGGCGACATGATGAGATTTAAGATTGATGCTGC-ATACATAAGGA 820 || ||||| | || ||||| ||| ||||| || | |||| ||| || || | Sbjct 30853 TTTCAAAGATATGGATGGTGACATCTTGATGTTTAAAATACAGTCTGCCATA-ATTAGAA 30795 Query 821 CAAGGTATCATCTTGTGTATTACACAAGTGAGTATGAGATCAAAACT-AGCTACACTTCA 879 | || ||| || | |||||||||||||||||| | | |||||| ||| || ||| Sbjct 30794 CCAGATATAGCCTATTATATTACACAAGTGAGTATCAATTAAAAACTGAGCGGCA-TTCT 30736 Query 880 AACTGTAAAGGGTCTGGCAGTTGCTGGTCAGGCGGTTGCAGAGATATAGGAGTTCATCCC 939 | || ||||| |||| |||||| ||||||| || ||||| || | ||||| Sbjct 30735 AGATGCAAAGGTGCTGGTGAATGCTGGACAGGCGGATGTCATGATATTGGCATGCATCCA 30676 Query 940 AGATTGAGAGCAATAGCCAACAGTAGCATAATGGGGTATGGGTGTGAAACTGATAATTTA 999 || |||| || | || | || | ||||| || || |||| |||||| ||| Sbjct 30675 GTTTTAAGAGAAACAAAGAATGGCAGTGTTATGGGATACGGATGTGGTACTGATGGTTTG 30616 Query 1000 GGGTGCGACGATTGGTGCTTTATGAAGACGTCGTGCACCTGGTATAAATGGGATATTAAA 1059 ||||| || | || || |||||||| | || ||||||| |||||| | || Sbjct 30615 GGGTGTGATACATTTTGTTTCATGAAGACAGCATGTACCTGGTGGAAATGGAGGTTGGAA 30556 Query 1060 AGTAAAGGTGTTTATGGTAAAGTTTATGAGAAGTCATCAGAGATATGGGAGGTCATTCTC 1119 |||| || | |||||| ||| ||||||||| || || |||||||| || | | || Sbjct 30555 AGTACTGGGGAATATGGTTCAGTGTATGAGAAGGTTTCTGAAATATGGGAAGTAAATATC 30496 Query 1120 AGGATTGATTACCAGAACGTTACAACGAGGCATAAGGTTAACGTGAATAATCCCAGGGTC 1179 ||| |||| || | | || | | | | | | | || ||||| ||||| || ||| Sbjct 30495 AGGGTTGAATATAAAGATGTGATCTCAAAGTACAGCCTGAATGTGAACAATCCTAGAGTC 30436 Query 1180 AATCTGGATGGACTTATGGATGGTATACCAATATATATAACCAGTATCTCATCAGAAACT 1239 ||| | |||| | |||| ||| || || ||| || | | || | || |||| Sbjct 30435 AATTTAGATGAAGGAATGGCAAATATGCCTATTTATGTAGCTGGGTTCACCTCTGAAATA 30376 Query 1240 GATAATGTACCAAATGGGATATTGGAGTACTTAGGTACAGGTTATGCTGTCAAAGCCTCT 1299 | ||| |||||||| | | || ||||| |||| ||| ||| ||| Sbjct 30375 TCTTCTGTCCCAAATGGTCTGATCATACACAAAGGTAGAGGTAATGAAACTAAAATCTCA 30316 Query 1300 CAGATGAATATGCCTGAGACAGATATAATTGGTGATTACCAAATAAGC 1347 | | ||||||||||||||||||||||| || ||||| ||||| ||| Sbjct 30315 GGGCTAAATATGCCTGAGACAGATATAATAGGAGATTATCAAATCAGC 30268 Score = 107 bits (118), Expect = 3e-20 Identities = 274/411 (67%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 646 GCATTTGGCTGCGACAATACTCTTTTTATTAGATCTGATGGCAAAGTGTGTGATGACAAA 705 ||| | || || || || || || | ||| ||||| ||||| ||||| |||||| | Sbjct 29531 GCAATAGGGTGTGATAACACACTGTATATCAGATCAGATGGGAAAGTTTGTGAT----AG 29476 Query 706 CAATGCATAAGCACATCT----ATGTACCAGTTGCATCTACAATCTGGTTCTGTCGTATG 761 || || | ||||| || |||||| |||||| || | |||||| || || || Sbjct 29475 CACTGGCTGTGCACAGCTGTCCATGTACGAGTTGCCACTGATAAGTGGTTCAGTTGTGTG 29416 Query 762 CTTTAAAGACTACAAAGGCGACATGATGAGATTTAAGATTGATGCTGC-ATACATAAGGA 820 || ||||| | || ||||| ||| ||||| || | |||| ||| || || | Sbjct 29415 TTTCAAAGATATGGATGGTGACATCTTGATGTTTAAAATACAGTCTGCCATA-ATTAGAA 29357 Query 821 CAAGGTATCATCTTGTGTATTACACAAGTGAGTATGAGATCAAAACT-AGCTACACTTCA 879 | || ||| || | |||||||||||||||||| | | |||||| ||| || ||| Sbjct 29356 CCAGATATAGCCTATTATATTACACAAGTGAGTATCAATTAAAAACTGAGCGGCA-TTCT 29298 Query 880 AACTGTAAAGGGTCTGGCAGTTGCTGGTCAGGCGGTTGCAGAGATATAGGAGTTCATCCC 939 | || ||||| |||| |||||| ||||||| || ||||| || | ||||| Sbjct 29297 AGATGCAAAGGTGCTGGTGAATGCTGGACAGGCGGATGTCATGATATTGGCATGCATCCA 29238 Query 940 AGATTGAGAGCAATAGCCAACAGTAGCATAATGGGGTATGGGTGTGAAACTGATAATTTA 999 || |||| || | || | || | ||||| || || |||| |||||| ||| Sbjct 29237 GTTTTAAGAGAAACAAAGAATGGCAGTGTTATGGGATACGGATGTGGTACTGATGGTTTG 29178 Query 1000 GGGTGCGACGATTGGTGCTTTATGAAGACGTCGTGCACCTGGTATAAATGG 1050 ||||| || | || || |||||||| | || ||||| | |||||| Sbjct 29177 GGGTGTGATACATTTTGTTTCATGAAGACAGCATGTACCTGATGGAAATGG 29127 >seq7436 Length=867 Score = 168 bits (186), Expect = 9e-39 Identities = 418/629 (66%), Gaps = 4/629 (1%) Strand=Plus/Plus Query 721 TCTATGTACCAGTTGCATCTACAATCTGGTTCTGTCGTATGCTTTAAAGACTACAAAGGC 780 || |||||| |||||| || | |||||| || || || || ||||| | || Sbjct 225 TCCATGTACGAGTTGCCACTGATAAGTGGTTCAGTTGTGTGTTTCAAAGATATGGATGGT 284 Query 781 GACATGATGAGATTTAAGATTGATGCTGC-ATACATAAGGACAAGGTATCATCTTGTGTA 839 ||||| ||| ||||| || | |||| ||| || || || || ||| || | || Sbjct 285 GACATCTTGATGTTTAAAATACAGTCTGCCATA-ATTAGAACCAGATATAGCCTATTATA 343 Query 840 TTACACAAGTGAGTATGAGATCAAAACT-AGCTACACTTCAAACTGTAAAGGGTCTGGCA 898 |||||||||||||||| | | |||||| ||| || ||| | || ||||| |||| Sbjct 344 TTACACAAGTGAGTATCAATTAAAAACTGAGCGGCA-TTCTAGATGCAAAGGTGCTGGTG 402 Query 899 GTTGCTGGTCAGGCGGTTGCAGAGATATAGGAGTTCATCCCAGATTGAGAGCAATAGCCA 958 |||||| ||||||| || ||||| || | ||||| || |||| || | | Sbjct 403 AATGCTGGACAGGCGGATGTCATGATATTGGCATGCATCCAGTTTTAAGAGAAACAAAGA 462 Query 959 ACAGTAGCATAATGGGGTATGGGTGTGAAACTGATAATTTAGGGTGCGACGATTGGTGCT 1018 | | || | ||||| || || |||| |||||| ||| ||||| || | || | Sbjct 463 ATGGCAGTGTTATGGGATACGGATGTGGTACTGATGGTTTGGGGTGTGATACATTTTGTT 522 Query 1019 TTATGAAGACGTCGTGCACCTGGTATAAATGGGATATTAAAAGTAAAGGTGTTTATGGTA 1078 | |||||||| | || ||||||| |||||| | |||||| || | |||||| Sbjct 523 TCATGAAGACAGCATGTACCTGGTGGAAATGGAGGTTGGAAAGTACTGGGGAATATGGTT 582 Query 1079 AAGTTTATGAGAAGTCATCAGAGATATGGGAGGTCATTCTCAGGATTGATTACCAGAACG 1138 ||| ||||||||| || || |||||||| || | | ||||| |||| || | | | Sbjct 583 CAGTGTATGAGAAGGTTTCTGAAATATGGGAAGTAAATATCAGGGTTGAATATAAAGATG 642 Query 1139 TTACAACGAGGCATAAGGTTAACGTGAATAATCCCAGGGTCAATCTGGATGGACTTATGG 1198 | | | | | | | | || ||||| ||||| || |||||| | |||| | |||| Sbjct 643 TGATCTCAAAGTACAGCCTGAATGTGAACAATCCTAGAGTCAATTTAGATGAAGGAATGG 702 Query 1199 ATGGTATACCAATATATATAACCAGTATCTCATCAGAAACTGATAATGTACCAAATGGGA 1258 ||| || || ||| |||| | || | || |||| | ||| |||||||| Sbjct 703 CAAATATGCCTATTTATGTAACTGGGTTCACCTCTGAAATATCTTCTGTCCCAAATGGTC 762 Query 1259 TATTGGAGTACTTAGGTACAGGTTATGCTGTCAAAGCCTCTCAGATGAATATGCCTGAGA 1318 | | || ||||| |||||||| ||| ||| | | ||||||||||||| Sbjct 763 TGATCATACACAAAGGTAGAGGTTATGAAACTAAAATCTCAGGGCTAAATATGCCTGAGA 822 Query 1319 CAGATATAATTGGTGATTACCAAATAAGC 1347 |||||||||| || ||||| ||||| ||| Sbjct 823 CAGATATAATAGGAGATTATCAAATCAGC 851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6983049360970