Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14]
34,365 sequences; 326,465,827 total letters
Query= NC_031310.1
Length=2111
Score E
Sequences producing significant alignments: (Bits) Value
seq19707 98.7 1e-17
seq24710 93.3 6e-16
seq10267 91.5 2e-15
>seq19707
Length=5155
Score = 98.7 bits (108), Expect = 1e-17
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 1007 TCTCAAAGCTGCCAAAGCGGTGGGCATTATCTTGAGCATTCTGATTGCACGGTTGCTGTA 1066
|| || || ||||| ||||| || |||||||| | |||| | || | ||||| ||
Sbjct 4692 TCACAGAGTTGCCAGAGCGGGGGTCATTATCTAAATGATTCCAACTGTGCAGTTGCAGTG 4751
Query 1067 GTTGCTGCAGTGTGTGCAACCCGGAACATGACAGACCAGAAGACAAGGAACCAGATCATA 1126
|| |||||||| ||||| || || || ||||| |||| || | || | || || ||
Sbjct 4752 GTGGCTGCAGTTTGTGCCACTCGTAATATGACTGACCCCAAAATCAGAGATCAAATTATT 4811
Query 1127 ACAAAGACATATAAGCAGTACATAGGGGCTAACAAGC-AGTTCTCTATGGAGATGTATGA 1185
|| ||||| || |||||||| | | ||| ||||| | || || || || | || ||
Sbjct 4812 ACTAAGACGTACAAGCAGTATGTTGCTGCTGGCAAGCCATTTGACTCTG-AGGTATACGA 4870
Query 1186 GGCCCTATGTCAGTTTGCAACTGGTGGTGTTCCTGCTGATCACTCAGCAAA 1236
| | || ||| |||||||||||| || |||||||| || || || ||
Sbjct 4871 AGGATTGTGCAAGTATGCAACTGGTGGGGTACCTGCTGAGCATTCCGCCAA 4921
>seq24710
Length=3567
Score = 93.3 bits (102), Expect = 6e-16
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 1018 CCAAAGCGGTGGGCATTATCTTGAGCATTCTGATTGCACGGTTGCTGTAGTTGCTGCAGT 1077
||| ||||| || |||||||| | |||| | || | ||||| || || ||||||||
Sbjct 2500 CCAGAGCGGGGGTCATTATCTAAATGATTCCAACTGTGCAGTTGCAGTGGTGGCTGCAGT 2559
Query 1078 GTGTGCAACCCGGAACATGACAGACCAGAAGACAAGGAACCAGATCATAACAAAGACATA 1137
||||| || || || ||||| |||| || | || | || || || || ||||| ||
Sbjct 2560 TTGTGCCACTCGTAATATGACTGACCCCAAAATCAGAGATCAAATTATTACTAAGACGTA 2619
Query 1138 TAAGCAGTACATAGGGGCTAACAAGC-AGTTCTCTATGGAGATGTATGAGGCCCTATGTC 1196
|||||||| | | ||| ||||| | || || || || | || || | | ||
Sbjct 2620 CAAGCAGTATGTTGCTGCTGGCAAGCCATTTGACTCTG-AGGTATACGAAGGATTGTGCA 2678
Query 1197 AGTTTGCAACTGGTGGTGTTCCTGCTGATCACTCAGCAAA 1236
||| |||||||||||| || |||||||| || || || ||
Sbjct 2679 AGTATGCAACTGGTGGGGTACCTGCTGAGCATTCCGCCAA 2718
>seq10267
Length=800
Score = 91.5 bits (100), Expect = 2e-15
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 1007 TCTCAAAGCTGCCAAAGCGGTGGGCATTATCTTGAGCATTCTGATTGCACGGTTGCTGTA 1066
|| || || ||||| ||||| || |||||||| | |||| | || | ||||| ||
Sbjct 219 TCACAGAGTTGCCAGAGCGGGGGTCATTATCTAAATGATTCCAACTGTGCAGTTGCAGTG 160
Query 1067 GTTGCTGCAGTGTGTGCAACCCGGAACATGACAGACCAGAAGACAAGGAACCAGATCATA 1126
|| |||||||| ||||| || || || ||||| |||| || | || | || || ||
Sbjct 159 GTGGCTGCAGTTTGTGCCACTCGTAATATGACTGACCCCAAAATCAGAGATCAAATTATT 100
Query 1127 ACAAAGACATATAAGCAGTACATAGGGGCTAACAAGC-AGTTCTCTATGGAGATGTATGA 1185
|| ||||| || ||||| || | | ||| ||||| | || || || || | || ||
Sbjct 99 ACTAAGACGTACAAGCAATATGTTGCTGCTGGCAAGCCATTTGACTCTG-AGGTATACGA 41
Query 1186 GGCCCTATGTCAGTTTGCAACTGGTGGTGTTCCTGCTGA 1224
| | || ||| |||||||||||| || ||||||||
Sbjct 40 AGGATTGTGCAAGTATGCAACTGGTGGGGTACCTGCTGA 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6643973212430
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |