Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_025376.1 Length=11096 Score E Sequences producing significant alignments: (Bits) Value seq313 105 5e-19 >seq313 Length=5067560 Score = 105 bits (116), Expect = 5e-19 Identities = 241/349 (69%), Gaps = 14/349 (4%) Strand=Plus/Minus Query 6317 AAAGGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCTCCCTAATGTCATGGCAGTTAAG 6376 ||| | |||||| | ||| | | |||| ||||||| | || ||||| ||| ||||| Sbjct 3837882 AAAAGCGAGAGAGCTAAAACTAGTCGGACGATTTTTTGCTCTCATGTCCTGGGCATTAAG 3837823 Query 6377 GGAGTACTTCGTCATCACAGAG-TACTTGATCAAAACACACTATGTCCCGTTGTTCAAGG 6435 |||||||| || ||||||||| |||| ||| || || | | | || |||| ||| | Sbjct 3837822 AGAGTACTTTGTTATCACAGAGCTACT-GATTAAGCGCCATTTTTTTCCCTTGTGCAAAG 3837764 Query 6436 GACTGACGATGGCAGATGACCTTACA--TCCGTTGTGAAGAAGATGTTGGACAACAC-AA 6492 | ||||||||||||||||| | ||| | || || || |||||| | | | | | Sbjct 3837763 GTCTGACGATGGCAGATGA--TAACAATACTGTCGTAAATAAGATGCTTCAAGCCTCGGA 3837706 Query 6493 ATGGACAAGGATTGGATGACTACTCCTCTA-TCTGTATTGCCAACCACATTGACTACGAA 6551 || | ||| | | ||| || | || | | ||||| || || | || ||| Sbjct 3837705 ATATAAAAGCACT-CATGGATA-TGATCAAGTTACCATTGCTAAACATGTCGATTACACT 3837648 Query 6552 AAATGGAATAATCATCAGAGGAAAGAGTCTAATGGTCCAGTGTTTCGAGTAATGGGACAG 6611 |||||||| ||| | ||||||||||| |||||| ||| || || || |||||||| || Sbjct 3837647 AAATGGAACAATTACCAGAGGAAAGAAGCTAATGATCCTGTTTTCCGTGTAATGGG-CAA 3837589 Query 6612 TTTCTAGGGTATCCTAGA--CTGTTTGAAAGGACACATGAGTTCTTTGA 6658 ||| || || | ||| |||||| | || |||||||||||||| Sbjct 3837588 TTT-TATGGGAATGGAGAACCTGTTTTGTCGTACCCATGAGTTCTTTGA 3837541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35391495929440