Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_028241.1 Length=14478 Score E Sequences producing significant alignments: (Bits) Value seq313 176 4e-40 >seq313 Length=5067560 Score = 176 bits (194), Expect = 4e-40 Identities = 356/521 (68%), Gaps = 22/521 (4%) Strand=Plus/Minus Query 9631 TTGGTAATTGGCCTTAAAGGGAAAGAGAGGGAATTGAAAGAAGCCGGACGATTCTTTTCC 9690 |||||||| || || | |||| ||| || | ||| || ||||||||| ||| | Sbjct 3837902 TTGGTAATAGGACTACGACCAAAAGCGAGAGAGCTAAAACTAGTCGGACGATTTTTTGCT 3837843 Query 9691 TTAATGTCCTGGGAATTAAGGGAATATTTCGTTGTAACTGAATTACTGATTAAACAACAT 9750 | |||||||||| |||||| || || || ||| | || || |||||||||| | ||| Sbjct 3837842 CTCATGTCCTGGGCATTAAGAGAGTACTTTGTTATCACAGAGCTACTGATTAAGCGCCAT 3837783 Query 9751 TATGTAAAGTTGTTCAAAGGTTTGACCATGGCAGATGATCTCCAAACTGTCATAAAGAAA 9810 | | | |||| ||||||| |||| |||||||||||| | | |||||| |||| || Sbjct 3837782 TTTTTTCCCTTGTGCAAAGGTCTGACGATGGCAGATGATAACAATACTGTCGTAAATAAG 3837723 Query 9811 ATGCTTGATACCTCACATGGTCAGGGAACCCGTACATATGATGCCATCACCATTGCCAAT 9870 |||||| | |||| | | | | || | | ||||||| | |||||||| || Sbjct 3837722 ATGCTTCAAGCCTCGGAATATAAAAGCACTCATGGATATGATCAAGTTACCATTGCTAAA 3837663 Query 9871 AACATAGACTATGAAAAATGGAATAATTATCAGAGAATGGAATCAAACGGTCCTGTATTC 9930 | | || || |||||||| ||||| ||||| | ||| | || | |||||| ||| Sbjct 3837662 CATGTCGATTACACTAAATGGAACAATTACCAGAGGAAAGAAGCTAATGATCCTGTTTTC 3837603 Query 9931 AGAGTAATGGGTCAATTCT-TG-----GGATATCCTAATTTGATACTCAGGACCCATGAG 9984 | |||||||| ||||| | || ||| | ||| |||| || | ||||||||| Sbjct 3837602 CGTGTAATGGG-CAATTTTATGGGAATGGAGAACCTGTTTTG----TC-GTACCCATGAG 3837549 Query 9985 TTTTTTCAGAAAAGT--TTAATTTATTATAATCAAAGACCTGATTTGATGAGAGT---AG 10039 || ||| |||| | || |||||||||| | ||| || |||||| ||| || Sbjct 3837548 TTCTTT--GAAAGTTCCTTCTTTTATTATAAAGATCAGCCTAATCTGATGATAGTAGAAG 3837491 Query 10040 TTGGGAAAAGTGCTATGAACAGTACTAAACATATCGTGTGCTGGGAAGGGCAGCTGGGTG 10099 |||||| | || |||||| | || || | ||||| ||| |||| ||| || | Sbjct 3837490 ATGGGAAGA---TTAAGAACAGAGGTGAAGATCTTGTGTGTTGGCAAGGTCAGGCAGGCG 3837434 Query 10100 GTTTAGAAGGGCTGAGACAAAAGGGGTGGAGTGTTGTCAAT 10140 | | || || || ||| || || ||||||||||||||| Sbjct 3837433 GATGCGAGGGTCTTCAACAGAAAGGTTGGAGTGTTGTCAAT 3837393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46210523554678