Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_011639.1 Length=13196 Score E Sequences producing significant alignments: (Bits) Value seq1544 89.7 4e-14 >seq1544 Length=1554 Score = 89.7 bits (98), Expect = 4e-14 Identities = 180/262 (69%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 8401 ATTGGACTAAAAGCTAAAGAAAGAGAAATGAAACGGATTGGAAGATTCTTCTCTTTAATG 8460 || ||| | | ||| ||||| | ||| | |||| | || || |||||| || ||||| Sbjct 274 ATCGGATTGAGAGCAAAAGAGCGGGAACTTAAACCTAAAGGGAGGTTCTTCGCTCTAATG 215 Query 8461 TCATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTACCTTATTAAGGAATATTTTGTT 8520 ||| || |||| |||||| | || || |||| | | || ||| | || | ||| Sbjct 214 AGTTGGTCTCTTCGAGATTATTTTCTCTTAACAGAGTGCTTGATAAAGAGACATATAGTT 155 Query 8521 CCTCTATTCCATGGATTAACTATGGCTGATGATCTACAAT-CTGTTATAAAGAAGATGTT 8579 || |||| |||||||| ||||| ||||| ||||||| | || |||| || ||| | Sbjct 154 CCCCTATGTACCGGATTAACCATGGCAGATGA-CTACAATACAGTCATAATTAAAATGAT 96 Query 8580 AGAAAATTCTCAAGGCCA-AGGATCTAATGATTATGAGTATGTTTCAATAGCAAATCATA 8638 || ||| ||| || | | ||| | |||||| | || | || ||||| ||| Sbjct 95 GCAAGCTTCATCAGGACAGAATACCTAGAG-TTATGACGAGGTAACCATCGCAAACCATG 37 Query 8639 TTGATTATGAAAAATGGAATAA 8660 ||||||| || ||||||||||| Sbjct 36 TTGATTACGAGAAATGGAATAA 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 42107498561741