Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_017685.1 Length=14717 Score E Sequences producing significant alignments: (Bits) Value seq1310 131 2e-26 seq1544 96.9 3e-16 >seq1310 Length=1959 Score = 131 bits (144), Expect = 2e-26 Identities = 354/522 (68%), Gaps = 26/522 (5%) Strand=Plus/Minus Query 9917 GAGATTATTTTGTTATAACGGAGTATCTGATaaaaaaaTACTAT-GTTCCATTATTCAAA 9975 ||||||||||| | |||| |||| ||||||| | | | ||| ||||| ||| | Sbjct 1950 GAGATTATTTTCTCTTAACAGAGTGCTTGATAAAGAGACA-TATAGTTCCCCTATGTACC 1892 Query 9976 GGATTAACAATGGCTGATGACCAAAATACTGTTGTCaaaaaaaTGTTAAAAGTATCTAAA 10035 |||||||| ||||| |||||| | ||||| || | | |||||| | ||| || | Sbjct 1891 GGATTAACCATGGCAGATGACTACAATACAGTCATAATTAAAATGATGCAAGCTTCATCA 1832 Query 10036 GGACAG--GGCCT-GATTGATTACAAAGAGATTACGATCGCTAATCATTTGGATTATGAG 10092 |||||| ||| || | || || ||| | || ||||| || ||| | ||||| ||| Sbjct 1831 GGACAGAATACCTAGAGTTATGAC---GAGGTAACCATCGCAAACCATGTTGATTACGAG 1775 Query 10093 AAGTGGAATAACTATCAAAGAAAAGAGTCCAATGGCCCTGTGTTCCGAGTCATGGGTCAA 10152 || ||||||||||||||| | || || | ||| || || ||| |||| | | Sbjct 1774 AAATGGAATAACTATCAACGTGCTGAAGGAAACGACCCCGTCCTCGAGGTCTTGGGACGA 1715 Query 10153 TTTTTGGGCTTACCTAATTTAATAGAAAGAACTCATGAGTTTTTTGAAAAAAGTCTTATT 10212 || || || | ||||| || | | || ||||| ||| || || ||||| ||| || Sbjct 1714 TTCTTTGGACTGCCTAAATTGTTTGTGAGGACTCACGAG-TTCTTCAAAAATTCCTTGTT 1656 Query 10213 -TATTACAATGGGAGGCCTGACTTGATGACAGTGCGTGGTAAAGAAGTGATCTCAA--AT 10269 ||||| || | || |||||| | ||| || ||| || ||| |||| || Sbjct 1655 CTATTATAAGGATAGACCTGACCTCATGGTTGTAGAGGGT---GATCAGATTTCAAACAT 1599 Query 10270 AAAGGGGAAGTTGTT-TGTTGGGAGGGTCAAAAAGGAGGCTTAGAAGGATTGAGACAAAA 10328 ||| |||| || || ||| | ||| | | || || | || ||||| |||||||| Sbjct 1598 TCCTGGGGAGTTCTTCTGATGGCAAGGTGAGGATGGGGGATGTGAGGGATTAAGACAAAA 1539 Query 10329 AGGGTGGAGT---GTT-CTCAATTGCCTAATGATCGAACGGGAATCAAAGATACGAAATA 10384 |||||||||| ||| | | ||| || |||| || |||||||||| ||||||| Sbjct 1538 AGGGTGGAGTCTAGTTAATTATTTGGCT-TTGAT-GA--GGGAATCAAAATCTCGAAATA 1483 Query 10385 CTCAAATAGGA-CTCTTGGCCCAAGGAGACAATCAAGTAATT 10425 | ||||| || |||| |||||||| || ||||||||| Sbjct 1482 CAAAAATAAGATATCTT-ATGCAAGGAGATAACCAAGTAATT 1442 >seq1544 Length=1554 Score = 96.9 bits (106), Expect = 3e-16 Identities = 192/279 (69%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 9836 AATTAGTAATAGGGTTGAAGGCTAAAGAAAGAGAATTAAAAATTGATGGCAGATTCTTCT 9895 || |||| || || |||| || ||||| | ||| | ||| | | || || |||||| Sbjct 282 AACTAGTGATCGGATTGAGAGCAAAAGAGCGGGAACTTAAACCTAAAGGGAGGTTCTTCG 223 Query 9896 CATTAATGTCATATGATATGAGAGATTATTTTGTTATAACGGAGTATCTGATaaaaaaaT 9955 | ||||| | | | ||||||||||| | |||| |||| ||||||| | | Sbjct 222 CTCTAATGAGTTGGTCTCTTCGAGATTATTTTCTCTTAACAGAGTGCTTGATAAAGAGAC 163 Query 9956 ACTAT-GTTCCATTATTCAAAGGATTAACAATGGCTGATGACCAAAATACTGTTGTCaaa 10014 | ||| ||||| ||| | |||||||| ||||| |||||| | ||||| || | | Sbjct 162 A-TATAGTTCCCCTATGTACCGGATTAACCATGGCAGATGACTACAATACAGTCATAATT 104 Query 10015 aaaaTGTTAAAAGTATCTAAAGGACAG--GGCCT-GATTGATTACAAAGAGATTACGATC 10071 |||||| | ||| || ||||||| ||| || | || || ||| | || ||| Sbjct 103 AAAATGATGCAAGCTTCATCAGGACAGAATACCTAGAGTTATGAC---GAGGTAACCATC 47 Query 10072 GCTAATCATTTGGATTATGAGAAGTGGAATAACTATCAA 10110 || || ||| | ||||| ||||| ||||||||||||||| Sbjct 46 GCAAACCATGTTGATTACGAGAAATGGAATAACTATCAA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46974548133320