Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20epiroticus_20[genbank_20GCA_5F000349105.1_202013-03-28] 2,673 sequences; 223,486,714 total letters Query= NC_028246.1 Length=14627 Score E Sequences producing significant alignments: (Bits) Value seq1310 89.7 5e-14 >seq1310 Length=1959 Score = 89.7 bits (98), Expect = 5e-14 Identities = 324/498 (65%), Gaps = 32/498 (6%) Strand=Plus/Minus Query 9858 TTGATaaaaaaaTATTATGTACCATTATTCAAAGGATTGACCATGGCTGATGATCAAAAT 9917 |||||||| | | || || || ||| | ||||| |||||||| ||||| | ||| Sbjct 1924 TTGATAAAGAGACATATAGTTCCCCTATGTACCGGATTAACCATGGCAGATGACTACAAT 1865 Query 9918 ACAGTAGTAAAGAAAATGCTCAAAGTTTCTAAAGGTCAAGGGCTAAC-AGA-TTATAAAG 9975 ||||| ||| |||||| | ||| ||| ||| || | || | ||| |||| | | Sbjct 1864 ACAGTCATAATTAAAATGATGCAAGCTTCATCAGGACA--GAATACCTAGAGTTATGACG 1807 Query 9976 AGATAACATTTGCTAATCACTTGGATTATGAGAAGTGGAATAATTATCAAAGGAGGGAAT 10035 || |||| | || || || | ||||| ||||| |||||||| |||||| | ||| Sbjct 1806 AGGTAACCATCGCAAACCATGTTGATTACGAGAAATGGAATAACTATCAACGTGCTGAAG 1747 Query 10036 CAAACGGTCCGGTGTTCAGAGTAATGGGCCAGTTTTTAGGTCTACCTCACTTAATAGAAA 10095 ||||| || || || || |||| | || || || || ||| | || | | | Sbjct 1746 GAAACGACCCCGTCCTCGAGGTCTTGGGACGATTCTTTGGACTGCCTAAATTGTTTGTGA 1687 Query 10096 GAACTCACGAGTTCTTTGAAAATAGTCTAATTTATTACAATGGCCGACCTGATTTAATGT 10155 | |||||||||||||| ||||| | | ||||| || | ||||||| | ||| Sbjct 1686 GGACTCACGAGTTCTTCAAAAATTCCTTGTTCTATTATAAGGATAGACCTGACCTCATGG 1627 Query 10156 ATGTCAGA----AATAAAGTT--GTACACTCCAAAGGTGATGACATCGTTTGCTGGGAAG 10209 ||| ||| || | || ||| ||| || || || | || ||| ||| Sbjct 1626 TTGT-AGAGGGTGATCAGATTTCAAACATTCC-----TGGGGAGTTCTTCTGATGGCAAG 1573 Query 10210 GACAAAAAGGAGGATTAGAGGGTCTAAGACAAAAAGGATGGAGTGTCCTTAA----TTGC 10265 | | | || |||| ||||| ||||||||||||| |||||| | |||| ||| Sbjct 1572 GTGAGGATGGGGGATGTGAGGGATTAAGACAAAAAGGGTGGAGTCTAGTTAATTATTTGG 1513 Query 10266 CTAATGATTGAGAGAGAATCAAAGATTCGGAACACCCAAATCGG----CTTATTGGCCCA 10321 || |||| ||| |||||||| ||| || || |||| | ||||| || Sbjct 1512 CT-TTGAT---GAGGGAATCAAAATCTCGAAATACAAAAATAAGATATCTTAT----GCA 1461 Query 10322 GGGAGACAACCAAGTAAT 10339 ||||| ||||||||||| Sbjct 1460 AGGAGATAACCAAGTAAT 1443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46686557034410