Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_002526.1 Length=14900 Score E Sequences producing significant alignments: (Bits) Value seq778 168 6e-38 >seq778 Length=78982 Score = 168 bits (186), Expect = 6e-38 Identities = 285/409 (70%), Gaps = 4/409 (1%) Strand=Plus/Minus Query 10023 AATTGGTAATTGGACTAAAGGCTAAGGAAAGAGAGCTTAAAGAAGAAGGGAGGttttttt 10082 || |||| |||||| | | ||| ||||| || || | ||| |||| |||| ||| Sbjct 32519 AACTGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTG 32460 Query 10083 CATTAATGTCTTATGAATTAAGGGATTATTTTGTCTCAACGGAGTACTTAATaaaaaaaT 10142 | | ||| || | |||| | ||||| || ||| ||| |||||||| ||||| || Sbjct 32459 CCCTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGC 32400 Query 10143 ACTTTGTGCCATTATTTGAAGGATTGACAATGGCTGATGACCTAAATACTGTTATCaaaa 10202 |||| || || |||| ||| || || ||||||||||| || || || |||| | Sbjct 32399 ACTTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTCAATA 32340 Query 10203 aaaTGTTAGATGTCTCTAGTGGTCAGGGAACAAGGGAATATGAATACATCACAATTGCCA 10262 ||||| | | | ||| |||||| ||| || ||||| | | |||||||| | Sbjct 32339 AAATGATGCAAGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTA 32280 Query 10263 ATAATATTGATTATGAAAAATGGAATAACTATCAAAGAATTGAATCCAATGGGCCGGTGT 10322 | | |||| |||||||| ||||| || ||||| ||| ||| | |||| ||||| | Sbjct 32279 ACCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTAT 32220 Query 10323 TCACTGTGATGGGACGATTTTTAGGCTTGCCTAATTTGTTTACTAGAACTCATGAGTTTT 10382 | | || |||||| ||| || || ||||| ||||||||| |||||| |||||||| | Sbjct 32219 TTTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCT 32160 Query 10383 TC-CAAAAG-AGTTTGATCTATTACAACCAAAGACCAGACCTCATGATG 10429 || |||||| | | | | |||||||| | ||||| ||| | ||| || Sbjct 32159 TCTCAAAAGCACTAT--TTTATTACAAGGATAGACCTGACTTAATGGTG 32113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47560834496048