Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_008514.1 Length=11545 Score E Sequences producing significant alignments: (Bits) Value seq778 116 3e-22 >seq778 Length=78982 Score = 116 bits (128), Expect = 3e-22 Identities = 280/412 (68%), Gaps = 14/412 (3%) Strand=Plus/Minus Query 6698 GATCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAGAAAGC---AGGACGTTTC 6754 || ||||| || ||||||| | || || || ||||| |||| | ||| || ||| Sbjct 32520 GAACTGGTCATTGGATTGAGGGCAAAGGAGAGGGAATT---GAAACCTAAAGGTCGGTTC 32464 Query 6755 TTCTCCCTTATGTCATGGAAATTACGAGAGTATTTCGTCATGACAGAATATCTGATCAAA 6814 || |||| ||| ||| ||||||||| || |||||||| || || || |||| || Sbjct 32463 TTTGCCCTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAG 32404 Query 6815 CACCACTTTGTCCCACTATTTCATGGATTGACTATGGCGGATGAC-ATGACTCAAGTTAT 6873 | ||||| ||||| ||| || || |||||||| ||||| | || || || | Sbjct 32403 AAGCACTTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACA-GTGGT 32345 Query 6874 GAAGAAAATGTTAGACAGAAGTCAAGGGCAAGG-AGAGAATGACTACCA-GAGAGTCAGT 6931 || |||||| | | | | || ||| | | || || || | ||| || | Sbjct 32344 CAATAAAATGATGCAAGCATCTTCTGGTCAAACCACACAA-GATTATGACGAG-GTTACA 32287 Query 6932 ATTGCAAACCATATTGACTATGAAAAGTGGAACAATCACCAAAGGAGAGAATCAAATGGA 6991 ||||| ||||| ||||||||||||||||||||||| | || || ||||| |||||| Sbjct 32286 ATTGCTAACCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGAT 32227 Query 6992 CCAACGTTTCGCGTGATGGGACAATTCTTGGGCTATCCATCTTTGATCGAAAAGACGCAT 7051 || ||| ||| |||||| ||||||| || | || |||| | | | || ||| Sbjct 32226 CCGGTATTTTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCAT 32167 Query 7052 GAGTTCTTCGAGAAAAGCCCGA-TATACTACAATGGCAGGCCGGATTTAATG 7102 ||||||||| |||||| | | | || ||||| | || || || |||||| Sbjct 32166 GAGTTCTTC-TCAAAAGCACTATTTTATTACAAGGATAGACCTGACTTAATG 32116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36828223260992