Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_011639.1 Length=13196 Score E Sequences producing significant alignments: (Bits) Value seq778 80.6 2e-11 >seq778 Length=78982 Score = 80.6 bits (88), Expect = 2e-11 Identities = 233/356 (65%), Gaps = 2/356 (1%) Strand=Plus/Minus Query 8399 TCATTGGACTAAAAGCTAAAGAAAGAGAAATGAAACGGATTGGAAGATTCTTCTCTTTAA 8458 |||||||| | | || || || || ||| |||||| | || | ||||| | | | Sbjct 32513 TCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCCCTGA 32454 Query 8459 TGTCATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTACCTTATTAAGGAATATTTTG 8518 || |||| | | |||| || || || | ||||||||| | || ||| | | || | Sbjct 32453 TGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCACTTCG 32394 Query 8519 TTCCTCTATTCCATGGATTAACTATGGCTGATGATCTACAA-TCTGTTATAAAGAAGATG 8577 | || ||| | || |||||||||||||||||| ||||| | || | || || ||| Sbjct 32393 TCCCGTTATGCACAGGTTTAACTATGGCTGATGAT-TACAACACAGTGGTCAATAAAATG 32335 Query 8578 TTAGAAAATTCTCAAGGCCAAGGATCTAATGATTATGAGTATGTTTCAATAGCAAATCAT 8637 | || ||| || ||| | | |||||||| | ||| |||| || || || Sbjct 32334 ATGCAAGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAACCAC 32275 Query 8638 ATTGATTATGAAAAATGGAATAATCACCAAAGGAAAGAATCAAATTATTATGTTTTCAAA 8697 |||| |||||||| ||||| ||| | || || |||| ||||| || || || Sbjct 32274 GTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATTTTCC 32215 Query 8698 GTAATGGGCCAGTGTTTCGGTCTTCCAAACTTATTTACACGAACACATGAATTCTT 8753 || ||||| | | || || | || || || ||| |||| ||||| ||||| Sbjct 32214 GTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTT 32159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 42108122258864