Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_017685.1 Length=14717 Score E Sequences producing significant alignments: (Bits) Value seq778 145 7e-31 >seq778 Length=78982 Score = 145 bits (160), Expect = 7e-31 Identities = 226/323 (70%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 9917 GAGATTATTTTGTTATAACGGAGTATCTGATaaaaaaaTACTATGTTCCATTATTCAAAG 9976 ||||||| || || ||||| ||||| ||||||| || ||| || || |||| || || Sbjct 32438 GAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCACTTCGTCCCGTTATGCACAG 32379 Query 9977 GATTAACAATGGCTGATGACCAAAATACTGTTGTCaaaaaaaTGTTAAAAGTATCTAAAG 10036 | ||||| ||||||||||| | || || || ||||| |||||| | ||| |||| | Sbjct 32378 GTTTAACTATGGCTGATGATTACAACACAGTGGTCAATAAAATGATGCAAGCATCTTCTG 32319 Query 10037 GACAGGGCCTGATTGATTACAAAGAGATTACGATCGCTAATCATTTGGATTATGAGAAGT 10096 | || | ||||| | ||| |||| || ||||| || | || ||||| |||| Sbjct 32318 GTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAACCACGTTGACTATGAAAAGT 32259 Query 10097 GGAATAACTATCAAAGAAAAGAGTCCAATGGCCCTGTGTTCCGAGTCATGGGTCAATTTT 10156 |||| || ||||| ||| ||| | |||| || || || || ||||| |||| | Sbjct 32258 GGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATTTTCCGTTATGGGAAAATTCT 32199 Query 10157 TGGGCTTACCTAATTTAATAGAAAGAACTCATGAGTTTTTTGAAAAAAGTCTTATTTATT 10216 | || || || ||||| | | ||||| |||||||| || |||| || |||||| Sbjct 32198 TTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTTCTCAAAAGCACTATTTTATT 32139 Query 10217 ACAATGGGAGGCCTGACTTGATG 10239 |||| | || |||||||| ||| Sbjct 32138 ACAAGGATAGACCTGACTTAATG 32116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46975243921280