Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_017714.1 Length=15867 Score E Sequences producing significant alignments: (Bits) Value seq778 161 1e-35 >seq778 Length=78982 Score = 161 bits (178), Expect = 1e-35 Identities = 255/360 (71%), Gaps = 4/360 (1%) Strand=Plus/Minus Query 11015 TGGTAATTGGGTTAAAAGCAAAGGAAAGGGAATTGAAGGATGCAGGTAGATTCTTTTCAT 11074 |||| ||||| || | |||||||| ||||||||||| | |||| | |||||| | Sbjct 32516 TGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCCC 32457 Query 11075 TGATGAGTTGGGAGTTAAGAGAGTATTTTGTATTCACAGAGTATTTGATTAAAGAA-CAT 11133 |||||||||||| ||| |||| || || || | || ||||| ||||| |||||| || Sbjct 32456 TGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGAT-AAAGAAGCAC 32398 Query 11134 TTTGTGCCATTATTCAAAGGATTAACTATGGCAGATGATCTACAA-ACTGTAATTAAAAA 11192 || || || |||| || ||| ||||||||||| |||||| ||||| || || | || || Sbjct 32397 TTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGAT-TACAACACAGTGGTCAATAA 32339 Query 11193 GATGATTGATGTATCAGCAGGACAAGGTACTGAAACCTATGAAAACATAACAATAGCGAA 11252 ||||| | | ||| | || ||| || || ||||| | | ||||| || || Sbjct 32338 AATGATGCAAGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAA 32279 Query 11253 TAATATTGACTATGAGAAGTGGAATAATTATCAAAGATATGATTCAAATAGTGCAATTTT 11312 | |||||||||| |||||||| |||||||| ||| || ||||| | | | || Sbjct 32278 CCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATT 32219 Query 11313 CACTGTCATGGGACAATTTTTAGGGTATCCAAAGTTAATAGCAAGAACTCATGAGTTTTT 11372 | || |||||| |||| || || | || || || | | ||||| |||||||| || Sbjct 32218 TTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTT 32159 Score = 84.2 bits (92), Expect = 2e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 10777 TGGCATAGACTGCCATTGATTAAATGTTTTGATATTCCTGATATGATTGACCCCAGTATA 10836 ||||||||||| |||||| | |||||||| || ||||| || ||||| ||||||| | | Sbjct 32757 TGGCATAGACTTCCATTGTTGAAATGTTTCGAGATTCCAGACATGATAGACCCCACAACA 32698 Query 10837 ATATACAGTGATAAATCTCATTCTAT 10862 ||||| ||| ||||||||||| || Sbjct 32697 ATATATTCTGACAAATCTCATTCAAT 32672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50655184691680