Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_020805.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq778 104 2e-18 >seq778 Length=78982 Score = 104 bits (114), Expect = 2e-18 Identities = 267/398 (67%), Gaps = 8/398 (2%) Strand=Plus/Minus Query 6300 TGGTGATCGGATTAAAAGGAAAAGAAAGAGAACTGAAGATTGCAGGTAGATTTTTCTCAT 6359 |||| || ||||| | | ||| || || ||| |||| | |||| | || || | Sbjct 32516 TGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCCC 32457 Query 6360 TGATGTCTTGGAAGC-TTAGG-GAATACTTTGTTGTCACAGAGTATTTGATCAAGACTCA 6417 ||||| |||| || ||| | || ||||| || | || ||||| ||||| |||| || Sbjct 32456 TGATGAGTTGG--GCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCA 32399 Query 6418 CTTTGTGCCATTGTTCCATGGGCTGACCATGGCTGATGA-TATGACAGCAGTGATCAAAA 6476 ||| || || || | | || | || ||||||||||| || ||| ||||| |||| | Sbjct 32398 CTTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACA-CAGTGGTCAATA 32340 Query 6477 AGATGCTGGAAAGCTCGTCTGGTCAAGGGCTAACAA-ACTACGACAGCGTTTGTATTGCA 6535 | ||| || || || ||||||||| | |||| | || ||| ||| ||||| Sbjct 32339 AAATGATGCAAGCATCTTCTGGTCAA-ACCACACAAGATTATGACGAGGTTACAATTGCT 32281 Query 6536 AATCATATTGACTATGAAAAATGGAATAATCATCAACGAAAATTGTCCAATGGACCTGTG 6595 || || ||||||||||||| ||||| ||| |||| || | | |||| || || Sbjct 32280 AACCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTA 32221 Query 6596 TTTAAAGTCATGGGACAATTCTTGGGTTATCCAAATTTGATATACCGGACACATGAGTTT 6655 ||| || |||||| ||||||| || | || |||||| | | || |||||||| Sbjct 32220 TTTTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTC 32161 Query 6656 TTTGAGAAAAGTTTAATTTACTATAATGAAAGACCGGA 6693 || ||| || |||| || || || ||||| || Sbjct 32160 TTCTCAAAAGCACTATTTTATTACAAGGATAGACCTGA 32123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35468244558592