Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_020805.1
Length=11120
Score E
Sequences producing significant alignments: (Bits) Value
seq778 104 2e-18
>seq778
Length=78982
Score = 104 bits (114), Expect = 2e-18
Identities = 267/398 (67%), Gaps = 8/398 (2%)
Strand=Plus/Minus
Query 6300 TGGTGATCGGATTAAAAGGAAAAGAAAGAGAACTGAAGATTGCAGGTAGATTTTTCTCAT 6359
|||| || ||||| | | ||| || || ||| |||| | |||| | || || |
Sbjct 32516 TGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCCC 32457
Query 6360 TGATGTCTTGGAAGC-TTAGG-GAATACTTTGTTGTCACAGAGTATTTGATCAAGACTCA 6417
||||| |||| || ||| | || ||||| || | || ||||| ||||| |||| ||
Sbjct 32456 TGATGAGTTGG--GCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCA 32399
Query 6418 CTTTGTGCCATTGTTCCATGGGCTGACCATGGCTGATGA-TATGACAGCAGTGATCAAAA 6476
||| || || || | | || | || ||||||||||| || ||| ||||| |||| |
Sbjct 32398 CTTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACA-CAGTGGTCAATA 32340
Query 6477 AGATGCTGGAAAGCTCGTCTGGTCAAGGGCTAACAA-ACTACGACAGCGTTTGTATTGCA 6535
| ||| || || || ||||||||| | |||| | || ||| ||| |||||
Sbjct 32339 AAATGATGCAAGCATCTTCTGGTCAA-ACCACACAAGATTATGACGAGGTTACAATTGCT 32281
Query 6536 AATCATATTGACTATGAAAAATGGAATAATCATCAACGAAAATTGTCCAATGGACCTGTG 6595
|| || ||||||||||||| ||||| ||| |||| || | | |||| || ||
Sbjct 32280 AACCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTA 32221
Query 6596 TTTAAAGTCATGGGACAATTCTTGGGTTATCCAAATTTGATATACCGGACACATGAGTTT 6655
||| || |||||| ||||||| || | || |||||| | | || ||||||||
Sbjct 32220 TTTTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTC 32161
Query 6656 TTTGAGAAAAGTTTAATTTACTATAATGAAAGACCGGA 6693
|| ||| || |||| || || || ||||| ||
Sbjct 32160 TTCTCAAAAGCACTATTTTATTACAAGGATAGACCTGA 32123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35468244558592
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |