Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_022755.1 Length=10692 Score E Sequences producing significant alignments: (Bits) Value seq778 122 6e-24 >seq778 Length=78982 Score = 122 bits (134), Expect = 6e-24 Identities = 264/388 (68%), Gaps = 8/388 (2%) Strand=Plus/Minus Query 5959 GCAAAGGAACGTGAGTTGAAAACCGTAGGTCGGTTCTTCTCTCTAATGTCTTGGAAATTA 6018 |||||||| | || |||||| | |||||||||||| | || ||| |||| |||| Sbjct 32499 GCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCCCTGATGAGTTGGGCATTA 32440 Query 6019 AGAGAATACTTCGTGATAACAGAGTATCTCATAAAGACTCATTTTGTTCCTTTGTTTCAC 6078 |||| |||||||| ||||| ||||| | ||||||| || || || || || | ||| Sbjct 32439 CGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCACTTCGTCCCGTT-ATGCAC 32381 Query 6079 -GGGCTCACCATGGCGGACGACCTGACA--GCTGTTATGAAGAAAATGATGGAGTCATCT 6135 || | || ||||| || || | ||| | || | || ||||||||| | ||||| Sbjct 32380 AGGTTTAACTATGGCTGATGA--TTACAACACAGTGGTCAATAAAATGATGCAAGCATCT 32323 Query 6136 TCAGGACAAGGCGCCTCCGACTATGATGCCATTGCCATTGCGAACCATATTGACTATGAA 6195 || || ||| | | || ||||| | || | ||||| ||||| ||||||||||| Sbjct 32322 TCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAACCACGTTGACTATGAA 32263 Query 6196 AAATGGAATAACCATCAACGGAAAGAATCCAATGGTCCTGTCTTCAGAGTCATGGGTCAG 6255 || ||||| || |||| | |||| | |||| ||| || || || ||||| | Sbjct 32262 AAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATTTTCCGTTATGGGAAAA 32203 Query 6256 TTCCTAGGGTATCCAAATTTAATTTACCGGACGCATGAGTTTTTTGAGAATAGC-CTCAT 6314 ||| | || | || ||||| || | || |||||| || || || ||| || | Sbjct 32202 TTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAG-TTCTTCTCAAAAGCACTATT 32144 Query 6315 ATATTACAATAACAGACCCGACCTGATG 6342 |||||||| | ||||| ||| | ||| Sbjct 32143 TTATTACAAGGATAGACCTGACTTAATG 32116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34098666006528