Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_025341.1 Length=11139 Score E Sequences producing significant alignments: (Bits) Value seq778 125 5e-25 >seq778 Length=78982 Score = 125 bits (138), Expect = 5e-25 Identities = 337/505 (67%), Gaps = 18/505 (4%) Strand=Plus/Minus Query 6265 TGATCATCGGATTGAAAGGGAAAGAGAGAGAAGTGAAAGTAAAAGGACGGTTCTTTTCAC 6324 || |||| ||||||| | || ||||| ||| ||||| ||||| ||||||||| | | Sbjct 32516 TGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCCC 32457 Query 6325 TCATGTCGTGGAAACTAAGAGAATATTTTGTTGTCACAGAATACCTAATCAAAGAA-CAT 6383 | ||| ||| | || |||| || || || | || || ||| | || |||||| || Sbjct 32456 TGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGAT-AAAGAAGCAC 32398 Query 6384 TTCGTCCCTCTCTTCAATGGATTGACTATGGCGGATGACATGACCACCGTAATATCAAAA 6443 |||||||| | | || || || |||||||| ||||| | ||| || | ||| Sbjct 32397 TTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTCAATAAA 32338 Query 6444 CTAATGGATCGCA-CTCAGGGCCAAGGAGGAGAGGACTACACCCAAGTTTGCATTGCTAA 6502 | ||| | ||| || || ||| | | || || | | ||| |||||||| Sbjct 32337 ATGATGCAA-GCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAA 32279 Query 6503 TCATATCGATTATGAAAAGTGGAACAATCATCAGAGAAAGCGTGCAACCGGACCTGTGTT 6562 || | || |||||||||||||||||| |||||||| |||| | || || || Sbjct 32278 CCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATT 32219 Query 6563 CATAGTCATGGGACAATTCCTTGGATTTCCTAAACTGATCTATAGAACACATGAGTTCTT 6622 || |||||| ||||| ||||||| || || || | |||||| ||||||||||| Sbjct 32218 TTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTT 32159 Query 6623 -TGAATCTAGCTGGGTGTATTACAATGCTAGACCTGATTTAATGG---TCATCCGAGATG 6678 | || || | |||||||| | ||||||||| ||||||| ||| | ||||| Sbjct 32158 CTCAAAAGCACT-ATTTTATTACAAGGATAGACCTGACTTAATGGTGATCAACGGAGAT- 32101 Query 6679 GGAGATTAGAAAA---TCTAGGTCCTGAAATAGTTTGTTGGAATGGACAAGATGGGGGGT 6735 || ||||||| | ||| || | |||| ||||| || || | || || | Sbjct 32100 --AGTCTAGAAAACTTGCCAGG---GGAGTTTATTTGCTGGAAAGGCCAGGCCGGAGGAT 32046 Query 6736 TAGAAGGGCTACGACAGAAAGGATG 6760 || ||||| ||||| ||||| || Sbjct 32045 GTGAGGGGCTTCGACAAAAAGGGTG 32021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35529043606464