Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_025342.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq778 116 3e-22 >seq778 Length=78982 Score = 116 bits (128), Expect = 3e-22 Identities = 278/415 (67%), Gaps = 4/415 (1%) Strand=Plus/Minus Query 6233 TGCAAATGATCTCATCATTGGGTTAAAAGGGAAAGAGCGTGAAGTAAAAATTAAGGGACG 6292 ||| ||||| || ||||||| || | | || ||| | ||| | ||| ||| || || Sbjct 32527 TGCCAATGAACTGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCG 32468 Query 6293 ATTCTTCTCTTTGATGTCTTGGAGATTGAGGGAATATTTCGTTGTTACAGAATATCTTAT 6352 ||||| | ||||| |||| ||| | || || ||||| | || || || | || Sbjct 32467 GTTCTTTGCCCTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGAT 32408 Query 6353 AAAGGAGCATTTCGTCCCATTATTCAATGGGTTGACAATGGCAGATGACATGACGACAGT 6412 |||| |||| |||||||| |||| || || || || ||||| ||||| | ||||| Sbjct 32407 AAAGAAGCACTTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGT 32348 Query 6413 GATATCGAAATTGATGGACAGAACCCAAGGTCAGGGCGGAGAGGACTACACACAAATCTG 6472 | | ||| ||||| | | | ||||| | | | || || || | | Sbjct 32347 GGTCAATAAAATGATGCAAGCATCTTCTGGTCAAACCACACAAGATTATG-ACGAGGTTA 32289 Query 6473 CA-TCGCCAATCACATTGACTATGAAAAATGGAACAATCATCAAAGAAAGGACGCCACCG 6531 || | || || ||| ||||||||||||| ||||||||| |||| ||| || || | | Sbjct 32288 CAATTGCTAACCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATG 32229 Query 6532 GCCCTGTCTTTAAGGTCATGGGACAGTTCTTGGGATTACCAAATTTAATCTATCGAACAC 6591 || || ||| || |||||| | ||||| ||||| || ||||| | | |||| | Sbjct 32228 ATCCGGTATTTTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCC 32169 Query 6592 ATGAGTTCTT-TGAACAGAGCTGGATTTATTATAATGGTAGGCCTGATTTGATGG 6645 |||||||||| | || || || ||||||| || | ||| ||||| || |||| Sbjct 32168 ATGAGTTCTTCTCAAAAGCACT-ATTTTATTACAAGGATAGACCTGACTTAATGG 32115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35468244558592