Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_025353.1 Length=11070 Score E Sequences producing significant alignments: (Bits) Value seq778 125 5e-25 >seq778 Length=78982 Score = 125 bits (138), Expect = 5e-25 Identities = 283/423 (67%), Gaps = 2/423 (0%) Strand=Plus/Minus Query 6316 GAGAATATTTCGTCATTACGGAGTATTTAATAAAGACACATTTTGTCCCCATGTTTAAGG 6375 |||| || |||||||| || ||||| || ||||||| || || ||||| | | | | Sbjct 32438 GAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCACTTCGTCCCGTTATGCACAG 32379 Query 6376 GATTGACAATGGCAGATGATCT-AACAGCTGTCATAAAGAAAATGATGGATACCTCATCA 6434 | || || ||||| |||||| |||| | || | || ||||||||| | | || || Sbjct 32378 GTTTAACTATGGCTGATGATTACAACA-CAGTGGTCAATAAAATGATGCAAGCATCTTCT 32320 Query 6435 GGACAGGGTTTGGATAATTACGACTCAATTTGCATAGCCAATCACATTGATTATGAGAAG 6494 || || | |||| ||| || || || || ||| |||| ||||| ||| Sbjct 32319 GGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAACCACGTTGACTATGAAAAG 32260 Query 6495 TGGAACAATCACCAGCGGAAAGAATCCAATGGTCCTGTTTTTAGGGTAATGGGACAATTC 6554 ||||||||| | ||| | |||| | |||| ||| || ||| || |||||| ||||| Sbjct 32259 TGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATTTTCCGTTATGGGAAAATTC 32200 Query 6555 CTTGGCTACCCCAATTTGATTGAACGCACCCATGAATTCTTTGAAAAAAGTCTGATTTAC 6614 |||| | ||||||||| ||| | |||||||| ||||| |||| || |||| Sbjct 32199 TTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTTCTCAAAAGCACTATTTTAT 32140 Query 6615 TATAATGGACGTCCAGACCTGATGCGAGTAAACGGAAACACCTTAGAAAACAGAACACCT 6674 || || | | || ||| | ||| | |||||| | | |||||||| || Sbjct 32139 TACAAGGATAGACCTGACTTAATGGTGATCAACGGAGATAGTCTAGAAAACTTGCCAGGG 32080 Query 6675 CTCAACGTTTGTTGGCAAGGTCAAGCTGGAGGCTTAGAGGGGCTTAGACAAAAAGGATGG 6734 |||| ||| |||| || || ||||| | ||||||||| |||||||||| || Sbjct 32079 GAGTTTATTTGCTGGAAAGGCCAGGCCGGAGGATGTGAGGGGCTTCGACAAAAAGGGTGA 32020 Query 6735 AGC 6737 ||| Sbjct 32019 AGC 32017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35308247064192