Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_025356.1 Length=11097 Score E Sequences producing significant alignments: (Bits) Value seq778 125 5e-25 >seq778 Length=78982 Score = 125 bits (138), Expect = 5e-25 Identities = 306/454 (67%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 6349 TTCTTTTCCCTGATGTCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTACTTAATA 6408 |||||| |||||||| ||| | | |||| || || ||||| || |||||||| ||| Sbjct 32466 TTCTTTGCCCTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATA 32407 Query 6409 AAGACTCATTATGTACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACATCAGTT 6468 |||| || | || || |||| || ||| | || ||||| |||||| | |||| Sbjct 32406 AAGAAGCACTTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTG 32347 Query 6469 GTAAAGAAGATGTTGGACAACA-CGAATGGACAAGGACTGGATGATTATTCATCGATTTG 6527 || || || ||| || | | || | ||| ||| | |||||| | || Sbjct 32346 GTCAATAAAATGATGCA-AGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTAC 32288 Query 6528 CATCGCCAATCACATCGACTATGAGAAGTGGAATAATCATCAGAGAAAAGAATCCAATGG 6587 || || || ||| | |||||||| |||||||| ||| |||||||| |||| | |||| Sbjct 32287 AATTGCTAACCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGA 32228 Query 6588 GCCTGTGTTTCGAGTCATGGGGCAGTTTTTGGGTTATCCCAGATTGTTTGAAAGAACCCA 6647 || || ||| || ||||| | || || || | |||| ||||||| |||||||| Sbjct 32227 TCCGGTATTTTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCA 32168 Query 6648 TGAGTT-TTTTGAATCAAGC-CTCATTTACTACAACGGCAGACCAGACTTGATGGATGTA 6705 |||||| || | || |||| || |||| ||||| | ||||| ||||| |||| | Sbjct 32167 TGAGTTCTTCTCAA--AAGCACTATTTTATTACAAGGATAGACCTGACTTAATGGTGATC 32110 Query 6706 AGAGGAGAT--TCGTTGATCAATACCACTGAAAAGTTGGTGTGTTGGGAGGGTCAGGCGG 6763 | |||||| || | || | | | | | |||| | || ||| | || ||||| | Sbjct 32109 AACGGAGATAGTC-TAGAAAACTTGC-CAGGGGAGTTTATTTGCTGGAAAGGCCAGGCCG 32052 Query 6764 GAGGATTGGAAGGATTGAGACAAAAAGGATGGAG 6797 |||||| || || | |||||||||| || || Sbjct 32051 GAGGATGTGAGGGGCTTCGACAAAAAGGGTGAAG 32018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35394645711168