Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_025358.1 Length=15024 Score E Sequences producing significant alignments: (Bits) Value seq778 150 2e-32 >seq778 Length=78982 Score = 150 bits (166), Expect = 2e-32 Identities = 280/410 (68%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 10144 AATTGGTGATTGGGTTGAAAGCTAAGGAACGAGAACTTAAAGAAGAAGGTAGATTCTTTT 10203 || |||| ||||| |||| || ||||| | ||| | ||| ||||| | |||||| Sbjct 32519 AACTGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTG 32460 Query 10204 CTTTAATGTCTTACGAATTGAGGGATTATTTTGTATCTACTGAATACCTGATCAAGAAAT 10263 | | ||| || | ||| | ||||| || || ||||| ||| |||| ||||| Sbjct 32459 CCCTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGC 32400 Query 10264 ATTTTGTACCCTTATTTGAAGGTCTAACAATGGCTGATGATTTGAATACAGTAATTAAGA 10323 | || || || |||| |||| |||| ||||||||||||| || ||||| | || | Sbjct 32399 ACTTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTCAATA 32340 Query 10324 AGATGTTGGATGTCTCAAGCGGCCAGGGAACCAGAGAA---TATGATTATATAACTATTG 10380 | ||| || | | || || || ||||| | || ||||| | | || |||| Sbjct 32339 AAATGATGCAAGCATCTTCTGGTCA---AACCACACAAGATTATGACGAGGTTACAATTG 32283 Query 10381 CAAACAACATCGATTATGAAAAATGGAATAATTATCAAAGGATAGAGTCTAACGGTCCAG 10440 | ||| || | || |||||||| ||||| |||||||| || ||| | || | ||| | Sbjct 32282 CTAACCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGG 32223 Query 10441 TATTTACTGTCATGGGAAAATTTTTGGGGCTACCTAATCTCTTTACAAGAACTCATGAAT 10500 ||||| | || ||||||||||| || || | || ||| | ||| ||||| ||||| | Sbjct 32222 TATTTTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGT 32163 Query 10501 TCTTCCAAAAAAGCTTGATTTATTATAACCAAAGGCCTGATTTAATGATG 10550 ||||| |||| | ||||||| || | || ||||| |||||| || Sbjct 32162 TCTTCTCAAAAGCACTATTTTATTACAAGGATAGACCTGACTTAATGGTG 32113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47957628109552