Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_025359.1 Length=11526 Score E Sequences producing significant alignments: (Bits) Value seq778 78.8 7e-11 >seq778 Length=78982 Score = 78.8 bits (86), Expect = 7e-11 Identities = 254/389 (65%), Gaps = 4/389 (1%) Strand=Plus/Minus Query 6642 AATGATCTGGTTATAGGACTCAAAGAAAAAGAAAGAGAACTTAAGGAGGAGGGAAGATTC 6701 ||||| ||||| || ||| | | | ||| || || ||| | || | || | ||| Sbjct 32523 AATGAACTGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTC 32464 Query 6702 TTTTCTCTTATGGGTTGGAAACTTCGACTTTATTTTGTGATAACTGAGTTCTTAATCAAG 6761 ||| | || ||| ||||| | | ||| ||| || || |||||||||| ||| || ||| Sbjct 32463 TTTGCCCTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAG 32404 Query 6762 AAATTCTACGTGCCGATGTTCAAAGGACTGACTATGGCGGATGACCTGAACACGGTAACT 6821 || || ||| ||| | | || ||| | |||||||| ||||| ||||| || Sbjct 32403 AAGCACTTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTC 32344 Query 6822 AAAAAACTCCTTAAAGCAACAGAAGGGCAAGGAAGAGACGATTATGACGAAATTTACATC 6881 || ||| | | ||||| | || ||| | | | ||||||||||| || || Sbjct 32343 AATAAAATGATGCAAGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATT 32284 Query 6882 GCCAA-CTCGTTGGATTACGACAAATGGAACAACAACCAACGCTATGAGTCTAATGAACA 6940 || || | |||| || || || || |||||||| | || | || | ||||| | Sbjct 32283 GCTAACCACGTT-GACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCC 32225 Query 6941 TGTATTCAGAGTTATGGGGAAATTTATGGGATTACCGGAGATATTCGCCATGACCCACAA 7000 ||||| |||||||| ||||| | ||||| || | | || | | ||||| | Sbjct 32224 GGTATTTTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGA 32165 Query 7001 GTT-TTTTCAACAGTCTCTAGTGTATTAC 7028 ||| || |||| || | ||| | |||||| Sbjct 32164 GTTCTTCTCAAAAG-CACTATTTTATTAC 32137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36767424213120