Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_025378.1 Length=11202 Score E Sequences producing significant alignments: (Bits) Value seq778 111 1e-20 >seq778 Length=78982 Score = 111 bits (122), Expect = 1e-20 Identities = 244/363 (67%), Gaps = 2/363 (1%) Strand=Plus/Minus Query 6329 GACCTTGTGATTGGACTTAAAGGGAAAG-AGAGAGAATTAAAATTGATTGGGCGTTTCTT 6387 || || || |||||| || | || |||| |||| ||||| ||| | || || ||||| Sbjct 32520 GAACTGGTCATTGGA-TTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTT 32462 Query 6388 TTCTCTCATGTCTTGGAAATTGAGAGAATACTTCGTCATAACCGAGCACCTAATTAAGAC 6447 | | || ||| |||| ||| |||| |||||||||||||| ||| || | || |||| Sbjct 32461 TGCCCTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAA 32402 Query 6448 TCACTTTGTCCCTCTGTTCCACGGACTTACGATGGCAGATGATCTCACATCAGTGATCAA 6507 ||||| ||||| | | | || | || ||||| |||||| || ||||| |||| Sbjct 32401 GCACTTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTCAA 32342 Query 6508 GAAGATGATGGACAGTTCCTCGGGGCAGGGGTTGACAGATTACTCAGCTGTATGCATAGC 6567 || |||||| | || || || || |||||| | || || || Sbjct 32341 TAAAATGATGCAAGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGC 32282 Query 6568 CAATCATATCGACTACGAAAAATGGAACAATCACCAGCGGAAAGAATCCAATGGGCCGGT 6627 || || | ||||| ||||| ||||||||| | ||| | |||| | |||| ||||| Sbjct 32281 TAACCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGT 32222 Query 6628 ATTCCGAGTAATGGGCCAATTCTTGGGCTTCCCCAATCTGATATCCAGAACGCACGAATT 6687 ||| || ||||| ||||||| || || |||||| || | ||||| || || || Sbjct 32221 ATTTTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTT 32162 Query 6688 CTT 6690 ||| Sbjct 32161 CTT 32159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35730640449408