Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_025384.1 Length=11190 Score E Sequences producing significant alignments: (Bits) Value seq778 114 9e-22 >seq778 Length=78982 Score = 114 bits (126), Expect = 9e-22 Identities = 271/404 (67%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 6266 CTGGTTATTGCCTTGAGGGTGAAAGAGAGAGAGATTAAGGACATCGGACGCTTCTTCGCG 6325 ||||| |||| ||||||| || ||||| || | || | || || ||||| || Sbjct 32517 CTGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCC 32458 Query 6326 CTCATGAGTTGGATGGTGCGGGAGTACTTTGTTATCACAGAATATCTCATCAAAGAGTTC 6385 || ||||||||| | || || ||||| || || || || || | || || || | Sbjct 32457 CTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCAC 32398 Query 6386 TACCTCCCCCTCTTCTCCGGACTCACCATGGCGGATGACTTCAACACAGTCACCGACAAA 6445 | | |||| | | | | || | || ||||| ||||| | ||||||||| | | ||| Sbjct 32397 TTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTCAATAAA 32338 Query 6446 ATGCTGAAGTGCAGCGAC-GGACAAGGGACAAATGACTACAAAACTGTGACCATTGCCAA 6504 ||| || | ||| | | || ||| ||| | || || | || || ||||| || Sbjct 32337 ATGATGCAA-GCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAA 32279 Query 6505 CCACCTGGACTACACTAAATGGAACAACCACCAGCGGGCAGAAGCAAACAATCCGGTATT 6564 |||| | ||||| || |||||||| | ||| | | ||||||||| |||||||||| Sbjct 32278 CCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATT 32219 Query 6565 CAAAGTGATGGGGCAATTCCTGGGGTACCCCAATCTATTCACCAGGTCCCACGAGATCTT 6624 || ||||| ||||| | || | |||||| | || || |||| ||| |||| Sbjct 32218 TTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTT 32159 Query 6625 C-CAGAAGTCACTGATCTATTACAAGGACAGGCCGGACCTGATG 6667 | || ||| |||| | ||||||||||| || || ||| | ||| Sbjct 32158 CTCAAAAG-CACTATTTTATTACAAGGATAGACCTGACTTAATG 32116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35692241050752