Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_025405.1 Length=11124 Score E Sequences producing significant alignments: (Bits) Value seq778 154 1e-33 >seq778 Length=78982 Score = 154 bits (170), Expect = 1e-33 Identities = 350/513 (68%), Gaps = 19/513 (4%) Strand=Plus/Minus Query 6283 ATGATCTTATAATTGGATTGAGAGCAAAGGAGAGAGAGTTGAAGAACAAAGGACGATTCT 6342 |||| || | ||||||||||| ||||||||||| || ||||| ||||| || |||| Sbjct 32522 ATGAACTGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCT 32463 Query 6343 TTGCACTGATGTCTTGGAGACTTAGAGAATATTTTGTGGTCACAGAATATTTGATCAAAA 6402 |||| |||||| |||| | | |||| || || || | || || || ||||| || | Sbjct 32462 TTGCCCTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGA 32403 Query 6403 AGCATTACATCCCTTTGTTCAAAGGCTTGACCATGGCGGATGATCTAAATACAGTAATAG 6462 |||| | | |||| || | || ||| || || ||||| |||||| || ||||| | Sbjct 32402 AGCACTTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTCA 32343 Query 6463 AAAAGATGATTCAGAGCA-CAAGCGGTCATGATAGAGAAGATAGCCGAAGACTTGTCACC 6521 | || ||||| || |||| | ||||| | | ||||| || || || || Sbjct 32342 ATAAAATGATGCA-AGCATCTTCTGGTCAAACCACACAAGAT-TATGACGA--GGTTACA 32287 Query 6522 GTCTGC-AACCATTTGGATTATGAAAAATGGAACAACAATCAAAGGGATGAGTCAAACCA 6580 | ||| ||||| | || |||||||| |||||||| |||| || | || |||| | Sbjct 32286 AT-TGCTAACCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGA 32228 Query 6581 TGCGGTATTCAAAGTGATGGGCCAATTTTTAGGATTTCCCAATTTGATAACTAGAACCCA 6640 | ||||||| || ||||| |||| || ||||| ||||||||| | ||||||||| Sbjct 32227 TCCGGTATTTTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCA 32168 Query 6641 TGAGATATT-TCAGAAATCCCTTATTTATTTTGTAAATAGACCAGACCTCATGACAACCC 6699 |||| | || ||| ||| | || |||||| ||||||| ||| | ||| | | Sbjct 32167 TGAGTTCTTCTCA-AAAGCACTATTTTATTACAAGGATAGACCTGACTTAATGGTGATC- 32110 Query 6700 AAAACGGAGAAATAATCAACAGAACAGAACA-ACGAG----TCTGCTGGCAAGGACAGGA 6754 ||||||| ||| || | | ||| || ||| | |||||| |||| |||| Sbjct 32109 --AACGGAG--ATAGTCTAGAAAACTTGCCAGGGGAGTTTATTTGCTGGAAAGGCCAGGC 32054 Query 6755 TGGAGGATTAGAAGGTTTAAGACAAAAAGGTTG 6787 ||||||| || || | |||||||||| || Sbjct 32053 CGGAGGATGTGAGGGGCTTCGACAAAAAGGGTG 32021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35481044358144