Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_025406.1 Length=11141 Score E Sequences producing significant alignments: (Bits) Value seq778 156 3e-34 >seq778 Length=78982 Score = 156 bits (172), Expect = 3e-34 Identities = 398/597 (67%), Gaps = 18/597 (3%) Strand=Plus/Minus Query 6310 GTCATAGGATTAAAAGGTAAGGAAAGAGAGCTGAAACAAGCAGGTAGATTCTTTTCATTG 6369 ||||| ||||| | | ||||| || || |||||| |||| | |||||| | || Sbjct 32514 GTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCCCTG 32455 Query 6370 ATGTCATGGGAGTTACGAGAGTACTTTGTCATTACCGAATATTTAATAAAACACCATTTT 6429 ||| |||| |||||||| ||||| ||||| || || || || ||||| | || || Sbjct 32454 ATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCACTTC 32395 Query 6430 GTACCTCTATTTAAGGGATTAACAATGGCAGATGAT-ATGACAGAAGTGATCAAAAAGAT 6488 || || ||| | || ||||| ||||| |||||| | ||| | ||| |||| || || Sbjct 32394 GTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACA-GTGGTCAATAAAAT 32336 Query 6489 GCTGGAAAGAAGTCAAGGCCAAGGAGAATTAGACTATCAACATGTGAGCATAGCGAACCA 6548 | || || | | || ||| | ||| ||| | | || | || || ||||| Sbjct 32335 GATGCAAGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAACCA 32276 Query 6549 TATAGATTATGAAAAGTGGAACAATCATCAAAGGAAAGAATCAAATGGACCAGT--TTTC 6606 | || |||||||||||||||||| |||| || |||| |||||| || || |||| Sbjct 32275 CGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATTTTC 32216 Query 6607 CGTGTGATGGGCCAATTCTTGGGCTATCCATCTTTGATAGAGAGAACGCATGAGTTCTTT 6666 ||| ||||| ||||||| || | || |||| | | ||||| ||||||||||| Sbjct 32215 CGTT--ATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTTC 32158 Query 6667 GAGAAAAGTCTTGTTTATTACAATGGTAGACCAGACTTGATGAAGGTAGAAAATGGTG-T 6725 ||| || |||||||||| | |||||| ||||| || ||| || || | | Sbjct 32157 TCAAAAGCACTATTTTATTACAAGGATAGACCTGACTTAAT---GGTGATCAACGGAGAT 32101 Query 6726 AGTATTGAATA--AAACAGATAATTTAGTTTGCTGGAATGGTCAAGCAGGGGGGTTAGAG 6783 ||| | ||| | ||| | || |||||||||| || || || || || | ||| Sbjct 32100 AGTCTAGAAAACTTGCCAGGGGAGTTTATTTGCTGGAAAGGCCAGGCCGGAGGATGTGAG 32041 Query 6784 GGACTGAGACAAAAAGGTTGGAGTATACTCAACTTGTTGG---TGATTAGACGTGAGTCC 6840 || || |||||||||| || || | |||| | |||| |||| | | | ||| Sbjct 32040 GGGCTTCGACAAAAAGGGTGAAGCTTGGTCAATTACTTGGCCTTGATGA---GGGCATCC 31984 Query 6841 AAAATCCGCAATACAAGGGTTCAGACATTAGCACAGGGAGACAATCAAGTGATCTGT 6897 ||| || ||||| ||| | | | ||| || || || |||||||| || ||| Sbjct 31983 AAAGCACGAAATACTAGGATCCGGTATTTAATGCAAGGTGATAATCAAGTCATATGT 31927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35535443506240