Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_025406.1
Length=11141
Score E
Sequences producing significant alignments: (Bits) Value
seq778 156 3e-34
>seq778
Length=78982
Score = 156 bits (172), Expect = 3e-34
Identities = 398/597 (67%), Gaps = 18/597 (3%)
Strand=Plus/Minus
Query 6310 GTCATAGGATTAAAAGGTAAGGAAAGAGAGCTGAAACAAGCAGGTAGATTCTTTTCATTG 6369
||||| ||||| | | ||||| || || |||||| |||| | |||||| | ||
Sbjct 32514 GTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCCCTG 32455
Query 6370 ATGTCATGGGAGTTACGAGAGTACTTTGTCATTACCGAATATTTAATAAAACACCATTTT 6429
||| |||| |||||||| ||||| ||||| || || || || ||||| | || ||
Sbjct 32454 ATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCACTTC 32395
Query 6430 GTACCTCTATTTAAGGGATTAACAATGGCAGATGAT-ATGACAGAAGTGATCAAAAAGAT 6488
|| || ||| | || ||||| ||||| |||||| | ||| | ||| |||| || ||
Sbjct 32394 GTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACA-GTGGTCAATAAAAT 32336
Query 6489 GCTGGAAAGAAGTCAAGGCCAAGGAGAATTAGACTATCAACATGTGAGCATAGCGAACCA 6548
| || || | | || ||| | ||| ||| | | || | || || |||||
Sbjct 32335 GATGCAAGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAACCA 32276
Query 6549 TATAGATTATGAAAAGTGGAACAATCATCAAAGGAAAGAATCAAATGGACCAGT--TTTC 6606
| || |||||||||||||||||| |||| || |||| |||||| || || ||||
Sbjct 32275 CGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATTTTC 32216
Query 6607 CGTGTGATGGGCCAATTCTTGGGCTATCCATCTTTGATAGAGAGAACGCATGAGTTCTTT 6666
||| ||||| ||||||| || | || |||| | | ||||| |||||||||||
Sbjct 32215 CGTT--ATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTTC 32158
Query 6667 GAGAAAAGTCTTGTTTATTACAATGGTAGACCAGACTTGATGAAGGTAGAAAATGGTG-T 6725
||| || |||||||||| | |||||| ||||| || ||| || || | |
Sbjct 32157 TCAAAAGCACTATTTTATTACAAGGATAGACCTGACTTAAT---GGTGATCAACGGAGAT 32101
Query 6726 AGTATTGAATA--AAACAGATAATTTAGTTTGCTGGAATGGTCAAGCAGGGGGGTTAGAG 6783
||| | ||| | ||| | || |||||||||| || || || || || | |||
Sbjct 32100 AGTCTAGAAAACTTGCCAGGGGAGTTTATTTGCTGGAAAGGCCAGGCCGGAGGATGTGAG 32041
Query 6784 GGACTGAGACAAAAAGGTTGGAGTATACTCAACTTGTTGG---TGATTAGACGTGAGTCC 6840
|| || |||||||||| || || | |||| | |||| |||| | | | |||
Sbjct 32040 GGGCTTCGACAAAAAGGGTGAAGCTTGGTCAATTACTTGGCCTTGATGA---GGGCATCC 31984
Query 6841 AAAATCCGCAATACAAGGGTTCAGACATTAGCACAGGGAGACAATCAAGTGATCTGT 6897
||| || ||||| ||| | | | ||| || || || |||||||| || |||
Sbjct 31983 AAAGCACGAAATACTAGGATCCGGTATTTAATGCAAGGTGATAATCAAGTCATATGT 31927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35535443506240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |