Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_028230.1 Length=12020 Score E Sequences producing significant alignments: (Bits) Value seq778 120 2e-23 >seq778 Length=78982 Score = 120 bits (132), Expect = 2e-23 Identities = 247/362 (68%), Gaps = 4/362 (1%) Strand=Plus/Minus Query 7194 ATCGGATTAAAAGCAAAAGAAAGGGAGATGAAAAGAATCGGAAGAtttttttCATTAATG 7253 || ||||| | ||||| || ||||| ||||| | || | || ||| | | ||| Sbjct 32511 ATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCCCTGATG 32452 Query 7254 TCTTGGGAATTAAGAGAATATTTTGTTTCTACTGAATATCTGATaaaaaaaTATTATGTT 7313 ||||| |||| |||| || || || ||||| || ||||||| || | | || Sbjct 32451 AGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCACTTCGTC 32392 Query 7314 CCATTATTCAAGGGATTGACAATGGCAGATGGATTA-ATGACAGTGGTGAAGAAAATGAT 7372 || |||| || || || || ||||| |||| |||| | |||||||| || |||||||| Sbjct 32391 CCGTTATGCACAGGTTTAACTATGGCTGATG-ATTACAACACAGTGGTCAATAAAATGAT 32333 Query 7373 TGATTCATCATGCGGGCAAGGAAATCTAGATTACAACACTGTATCAATTGCCAATCATAT 7432 | |||| | || ||| | | |||||| || || ||||||| || || | Sbjct 32332 GCAAGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAACCACGT 32273 Query 7433 AGATTATACAAAGTGGAACAATCACCAGAGAAG-GAAGTCCAATCACCCTGTTTTTACTG 7491 || ||| ||||||||||||| | |||||| | |||| | ||| | || || ||| | | Sbjct 32272 TGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAG-CAAATGATCCGGTATTTTCCG 32214 Query 7492 TGATGGGACAGTTTTTGGGGTACCCGAACCTGATCACTAGAACTCATGAGTTCTTCGAAA 7551 | |||||| | || || || | || || || | |||||| |||||||||||| || Sbjct 32213 TTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTTCTCAA 32154 Query 7552 AA 7553 || Sbjct 32153 AA 32152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38348199457792