Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_028234.1 Length=12162 Score E Sequences producing significant alignments: (Bits) Value seq778 149 5e-32 >seq778 Length=78982 Score = 149 bits (164), Expect = 5e-32 Identities = 247/354 (70%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 7385 ATTGGATTAAAGGCCAAAGAAAGAGAACTGAAAAGGAAAGGTAGAtttttttCTCTAATG 7444 |||||||| | ||| || || || ||| ||||| |||||| | || ||| | || ||| Sbjct 32511 ATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCCCTGATG 32452 Query 7445 ACTTGGAGATTGAGAGAATACTTTGTTGCAACTGAATTCCTGATTAAAAAACATTTTGTC 7504 | |||| ||| |||| ||||| || |||||| | | |||| || || || || ||| Sbjct 32451 AGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCACTTCGTC 32392 Query 7505 CCTCTATTTGAGGGACTAACTATGGCAGATGATTTGATCACAGTTGTGaaaaaaaTGATT 7564 || ||| || |||||||||| ||||||| | |||||| || || |||||||| Sbjct 32391 CCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTCAATAAAATGATG 32332 Query 7565 CGAAACTCAAATGGACAAGGATTAAATGATTACAGTAGAA-TAACTATAGCAAATCATAT 7623 | | || ||| ||| | | ||||| | || | || || || || || | Sbjct 32331 CAAGCATCTTCTGGTCAAACCACACAAGATTAT-GACGAGGTTACAATTGCTAACCACGT 32273 Query 7624 TGATTATGAAAAGTGGAATAATCATCAAAGAAAGGAATCAAATAAATATGTTTTTAAAGT 7683 ||| |||||||||||||| ||| |||| ||| ||| ||||| | || ||| || Sbjct 32272 TGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATTTTCCGT 32213 Query 7684 TATGGGGCAATTCTTAGGTTATCCTAATTTAATTGTCAGAACCCATGAGTTTTT 7737 |||||| ||||||| || | || ||||| |||| |||||||||||||| || Sbjct 32212 TATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTT 32159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38802592341888