Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_028239.1 Length=16133 Score E Sequences producing significant alignments: (Bits) Value seq778 163 3e-36 >seq778 Length=78982 Score = 163 bits (180), Expect = 3e-36 Identities = 280/401 (70%), Gaps = 4/401 (1%) Strand=Plus/Minus Query 11285 GTAATTGGTCTTAAGGCTAAAGAGAGGGAATTGAAAGATGCTGGGAGGtttttttCATTA 11344 || ||||| | | ||| || ||||||||||||||| | || |||| ||| | | Sbjct 32514 GTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCCCTG 32455 Query 11345 ATGAGCTGGGAGCTGAGGGAGTACTTCGTATTTACTGAATACCTAATTAAAGAGCATTTT 11404 ||||| |||| | | || |||||||| | ||||| ||| | || || |||| || Sbjct 32454 ATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCACTTC 32395 Query 11405 GTACCATTATTTAAGGGTCTGACTATGGCTGATGACTTACAA-ACAGTTATTAAGAAGAT 11463 || || |||| | ||| | |||||||||||||| |||||| ||||| | || || || Sbjct 32394 GTCCCGTTATGCACAGGTTTAACTATGGCTGATGA-TTACAACACAGTGGTCAATAAAAT 32336 Query 11464 GATAGATGTGTCTTCTGGTCAAGGCACTGAGACATATGAGAATATCACCATTGCAAATAA 11523 ||| | | |||||||||||| ||| | ||||| | | || ||||| || | Sbjct 32335 GATGCAAGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAACCA 32276 Query 11524 CATAGATTATGAGAAATGGAATAATTATCAAAGGTATGAATCTAATCATGCAATATTCAC 11583 | | || ||||| || ||||| |||||||| || ||| | ||| || | |||| | Sbjct 32275 CGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATTTTC 32216 Query 11584 AGTGATGGGGCAATTTTTAGGGTATCCAAAGTTAATTGCAAGAACTCATGAGTTTTTTGA 11643 || ||||| |||| || || | || || || ||| ||||| |||||||| || Sbjct 32215 CGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTTCTC 32156 Query 11644 GAAAAGC-CTAGTTTATTATAACCAAAGACCTGACTTAATG 11683 |||||| ||| ||||||| || | ||||||||||||||| Sbjct 32155 -AAAAGCACTATTTTATTACAAGGATAGACCTGACTTAATG 32116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51506370991616