Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_028241.1 Length=14478 Score E Sequences producing significant alignments: (Bits) Value seq778 145 7e-31 >seq778 Length=78982 Score = 145 bits (160), Expect = 7e-31 Identities = 280/407 (69%), Gaps = 12/407 (3%) Strand=Plus/Minus Query 9632 TGGTAATTGGCCTTAAAGGGAAAG-AGAGGGAATTGAAAGAAGCCGGACGATTCTTTTCC 9690 |||| ||||| || | || |||| |||||||||||||| || || |||||| || Sbjct 32516 TGGTCATTGGA-TTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCC 32458 Query 9691 TTAATGTCCTGGGAATTAAGGGAATATTTCGTTGTAACTGAATTACTGATTAAACAACAT 9750 | ||| |||| |||| | || || ||||| ||||||| | |||| || | || Sbjct 32457 CTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCAC 32398 Query 9751 TATGTAAAGTTGTTCAAAGGTTTGACCATGGCAGATGATCTCCAAACTGTCATAAAGAAA 9810 | || ||| | || |||||| || ||||| |||||| | | || || | || ||| Sbjct 32397 TTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTCAATAAA 32338 Query 9811 ATGCTTGATACCTCACATGGTCAGGGAACCCGTACA----TATGATGCCATCACCATTGC 9866 ||| | | | || |||||| | || ||| ||||| | | || ||||| Sbjct 32337 ATGATGCAAGCATCTTCTGGTCA----AACCACACAAGATTATGACGAGGTTACAATTGC 32282 Query 9867 CAATAACATAGACTATGAAAAATGGAATAATTATCAGAGAATGGAATCAAACGGTCCTGT 9926 || || | ||||||||||| ||||| |||||||||||| ||| |||| | ||| || Sbjct 32281 TAACCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGT 32222 Query 9927 ATTCAGAGTAATGGGTCAATTCTTGGGATATCCTAATTTGATACTCAGGACCCATGAGTT 9986 ||| || ||||| ||||||| |||| || |||||| | | || ||||||||||| Sbjct 32221 ATTTTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTT 32162 Query 9987 -TTTTCAGAAAAGTTTAATTTATTATAATCAAAGACCTGATTTGATG 10032 || ||| ||| || ||||||| || | |||||||| || ||| Sbjct 32161 CTTCTCA-AAAGCACTATTTTATTACAAGGATAGACCTGACTTAATG 32116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46210456230736