Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_028246.1 Length=14627 Score E Sequences producing significant alignments: (Bits) Value seq778 178 1e-40 >seq778 Length=78982 Score = 178 bits (196), Expect = 1e-40 Identities = 349/509 (69%), Gaps = 14/509 (3%) Strand=Plus/Minus Query 9751 AACTGGTAATAGGACTAAAAGCTAAAGAGAGAGAATT-AAAGATAGAAGGTAGAtttttt 9809 ||||||| || ||| | | || || ||||| ||||| ||| || ||||| | || ||| Sbjct 32519 AACTGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTA-AAGGTCGGTTCTTT 32461 Query 9810 tCATTGATGTCATATGACATGAGG-GATTACTTCGTAATGACTGAATATTTGATaaaaaa 9868 | ||||| | | ||| | | ||||||||||| || ||||| || |||||||| || Sbjct 32460 GCCCTGATGAGTTGGG-CATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAA 32402 Query 9869 aTATTATGTACCATTATTCAAAGGATTGACCATGGCTGATGATCAAAATACAGTAGTAAA 9928 | | || || |||| || ||| || || |||||||||||| | || ||||| || || Sbjct 32401 GCACTTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTCAA 32342 Query 9929 GAAAATGCTCAAAGTTTCTAAAGGTCAAGGGCTAACAGATTATAAAGAGATAACATTTGC 9988 |||||| | ||| ||| |||||| | ||||||| | ||| | ||| |||| Sbjct 32341 TAAAATGATGCAAGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGC 32282 Query 9989 TAATCACTTGGATTATGAGAAGTGGAATAATTATCAAAGGAGGGAATCAAACGGTCCGGT 10048 ||| ||| | || ||||| |||||||| |||||||| || | ||| |||| | |||||| Sbjct 32281 TAACCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGT 32222 Query 10049 GTTCAGAGTAATGGGCCAGTTTTTAGGTCTACCTCACTTAATAGAAAGAACTCACGAGTT 10108 || || ||||| | || || || | || | || | | ||||| || ||||| Sbjct 32221 ATTTTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTT 32162 Query 10109 CTTTGAAAATAGTCTAATTTATTACAATGGCCGACCTGATTTAATGTATGTCA---GAAA 10165 ||| ||| ||| |||||||||| | ||||||| |||||| ||| || | Sbjct 32161 CTTCTCAAAAGCACTATTTTATTACAAGGATAGACCTGACTTAATGGTGATCAACGGAGA 32102 Query 10166 TAAAGTTGTACACT--CCAAAGGTGATGACATCGTTTGCTGGGAAGGACAAAAAGGAGGA 10223 || | | | ||| ||| || | | | |||||||| |||| || |||||| Sbjct 32101 TAGTCTAGAAAACTTGCCAGGGGAGTTTA-----TTTGCTGGAAAGGCCAGGCCGGAGGA 32047 Query 10224 TTAGAGGGTCTAAGACAAAAAGGATGGAG 10252 | ||||| || |||||||||| || || Sbjct 32046 TGTGAGGGGCTTCGACAAAAAGGGTGAAG 32018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46687248556640