Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_031079.1 Length=11843 Score E Sequences producing significant alignments: (Bits) Value seq778 93.3 3e-15 >seq778 Length=78982 Score = 93.3 bits (102), Expect = 3e-15 Identities = 266/404 (66%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 6769 CTGGTGATCGGGTTGAAGGGGAAGGAAAGGGAGATCAAGAAGAATGGGAGGTTCTTCGCA 6828 ||||| || || |||| || ||||| ||||| | || || || ||||||| || Sbjct 32517 CTGGTCATTGGATTGAGGGCAAAGGAGAGGGAATTGAAACCTAAAGGTCGGTTCTTTGCC 32458 Query 6829 CTCATGTCCTGGGACCTTCGGGAGTACTTTGTATCCACTGAATATCTTATTAAAATGTTC 6888 || ||| |||| | || || ||||| || ||||| || | || || | | | Sbjct 32457 CTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAGTACTTGATAAAGAAGCAC 32398 Query 6889 TATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCTGTCACCAAAAAG 6948 | ||||| || | | |||| | || ||||| |||||| ||| | || ||| || Sbjct 32397 TTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTACAACACAGTGGTCAATAAA 32338 Query 6949 ATCCTTGGGTGCACCTTC-GGTCAAGGGCTTGCAGGGTACACTGCAGTTACATTCACTAA 7007 || | | ||| |||| |||||| || || | |||||| | |||| Sbjct 32337 ATGAT-GCAAGCATCTTCTGGTCAAACCACACAAGATTATGACGAGGTTACAATTGCTAA 32279 Query 7008 CCACCTAGATTACGAAAAGTGGAACAACCATCAGAGGCGGGAGGCCACTGACCCGGTTTT 7067 |||| | || || |||||||||||||| ||||||| | || || | ||| ||||| || Sbjct 32278 CCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAAGCAAATGATCCGGTATT 32219 Query 7068 CAGAGTGATGGGTCAGTTCTTTGGACTTCCTGAGCTGTTTGTCCGCACCCACGAGTTCTT 7127 || ||||| | ||||||||| | || | ||||||| | ||||| |||||||| Sbjct 32218 TTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTTAGAACCCATGAGTTCTT 32159 Query 7128 C-CAGAAGAGTCTGATCTATTACGGAGAAAGACCAGACCTGATG 7170 | || ||| || | |||||| || ||||| ||| | ||| Sbjct 32158 CTCAAAAG-CACTATTTTATTACAAGGATAGACCTGACTTAATG 32116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37781808327616