Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_031278.1 Length=12247 Score E Sequences producing significant alignments: (Bits) Value seq778 132 4e-27 >seq778 Length=78982 Score = 132 bits (146), Expect = 4e-27 Identities = 370/557 (66%), Gaps = 13/557 (2%) Strand=Plus/Minus Query 7341 AATGGCCGATTCTTTTCTCTGATGTCCTGGGATTTACGAGATTATTTTGTTATAACGGAG 7400 || || || |||||| | |||||| |||| ||||||||||| || || ||||| ||| Sbjct 32475 AAAGGTCGGTTCTTTGCCCTGATGAGTTGGGCATTACGAGATTACTTCGTCATAACTGAG 32416 Query 7401 TATCTGATTAAAACCCATTTTGTTCCCCTCTTTTATGGACTGACAATGGCTGATGATATG 7460 || |||| || | || || || || | | || | || |||||||||||| Sbjct 32415 TACTTGATAAAGAAGCACTTCGTCCCGTTATGCACAGGTTTAACTATGGCTGATGATTAC 32356 Query 7461 ACAACAGTAGTACGCAAGATGATGGAAAACACCAGTGGACAGGGTTCTGATGATTATGAG 7520 | ||||| || || |||||| || | ||| || | | |||||||| Sbjct 32355 AACACAGTGGTCAATAAAATGATGCAAGCATCTTCTGGTCAAACCACACAAGATTATGAC 32296 Query 7521 CACATAGGAATTGCCAATCACTTGGATTATGAAAAGTGGAATAATCACCAAAGATACCAA 7580 | | |||||| || ||| | || |||||||||||||| ||| | || ||| || Sbjct 32295 GAGGTTACAATTGCTAACCACGTTGACTATGAAAAGTGGAACAATTATCAGAGAGGAGAA 32236 Query 7581 TCTACAGAACCTGTATTCACAGTCATGGGCAAATTCCTCGGATATCCGAATTTAATTGCG 7640 | | || || ||||| | || ||||| |||||| | |||| || ||||| ||| Sbjct 32235 GCAAATGATCCGGTATTTTCCGTTATGGGAAAATTCTTTGGATTGCCCAATTTGTTTGTT 32176 Query 7641 AGAACTCATGAGTTCTTCGAGAAAAGC-TTCATTTACCACGGCGGTAGAGCAGACTTAAT 7699 ||||| |||||||||||| |||||| | |||| || | |||| | |||||||| Sbjct 32175 AGAACCCATGAGTTCTTC-TCAAAAGCACTATTTTATTACAAGGATAGACCTGACTTAAT 32117 Query 7700 GAAGATCTCCAACGGCAACATAGT-TAACAAGGATCCCA-GTAAGATGGTATGCTGGCAG 7757 | ||| |||||| | ||||| || || | ||| | || | | |||||| | Sbjct 32116 GGTGAT---CAACGG--AGATAGTCTAGAAAACTTGCCAGGGGAGTTTATTTGCTGGAAA 32062 Query 7758 GGCCAGAAGGGCGGATTGGAAGGACTTCGACAAAAGGGGTGGAGCATATTGAATCTATTA 7817 |||||| || |||| || || ||||||||||| ||||| ||| | | ||| || | Sbjct 32061 GGCCAGGCCGGAGGATGTGAGGGGCTTCGACAAAAAGGGTGAAGCTTGGTCAAT-TACTT 32003 Query 7818 GTCATTCGA--AGGGAAGGACAAGACCGGAACACCCGAATCCGATGCTTAGCTCAAGGAG 7875 | | || || |||| | ||| || || || | ||||| | ||| ||||| | Sbjct 32002 GGCCTT-GATGAGGGCATCCAAAGCACGAAATACTAGGATCCGGTATTTAATGCAAGGTG 31944 Query 7876 ATAATCAGGTTATCTGT 7892 ||||||| || || ||| Sbjct 31943 ATAATCAAGTCATATGT 31927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39074588082368