Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_031690.1 Length=11308 Score E Sequences producing significant alignments: (Bits) Value seq778 116 3e-22 >seq778 Length=78982 Score = 116 bits (128), Expect = 3e-22 Identities = 229/339 (68%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 4478 TCAGGTCTATCCAGGTAATATATCAGTGATTTTTCAAAGAATTCATGAGTTCGAGATATT 4537 |||||||||||| |||||| | |||| |||| ||||| ||||| |||| | | Sbjct 32123 TCAGGTCTATCCTTGTAATAAAATAGTGCTTTTGAGAAGAACTCATGGGTTCTAACAAAC 32182 Query 4538 AGTTTTGGATACCCAAGAAACTTTCCCATCACATCAAATACAGGATTATTGGCTTTGGCT 4597 | || || | |||| || |||||||| || |||||| |||| ||| |||| || Sbjct 32183 AAATTGGGCAATCCAAAGAATTTTCCCATAACGGAAAATACCGGATCATTTGCTTCTCCT 32242 Query 4598 CGTTGATGGTTATTCCATTTGCTATAATCAAAGTGATTGGCGATACAGATGTTCTCGTAC 4657 | |||| || ||||| || ||| |||| ||| || || || | | || || Sbjct 32243 CTCTGATAATTGTTCCACTTTTCATAGTCAACGTGGTTAGCAATTGTAACCTCGTCATAA 32302 Query 4658 CCTTCACTTCCTTGACCTGAAGTTGTATCCATCATTTTCTTTATGACGGTAGTCATATCA 4717 ||| | |||||| |||| || | ||||||||| || | || || | |||| Sbjct 32303 TCTTGTGTGGTTTGACCAGAAGATGCTTGCATCATTTTATTGACCACTGTGTTGTAATCA 32362 Query 4718 TCTGCCATAGTTAGTCCTTTAAACAATGGAACAAAGTGAGTCTTGATTAGGTGTTCTGTT 4777 || |||||||||| ||| | | || || || ||||| |||| || | || || ||| Sbjct 32363 TCAGCCATAGTTAAACCTGTGCATAACGGGACGAAGTGCTTCTTTATCAAGTACTCAGTT 32422 Query 4778 ATTACAAAATACTCTCGTAAAGCCCAGGTCAATAGAGCA 4816 || || || || |||||||| ||||| ||| || ||| Sbjct 32423 ATGACGAAGTAATCTCGTAATGCCCAACTCATCAGGGCA 32461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36069835137536