Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_031691.1 Length=11238 Score E Sequences producing significant alignments: (Bits) Value seq778 168 5e-38 >seq778 Length=78982 Score = 168 bits (186), Expect = 5e-38 Identities = 349/510 (68%), Gaps = 16/510 (3%) Strand=Plus/Plus Query 4337 CTCCATCCTTTTTGCCTAAGCCCCTCTAGTCCACCAGATTGCCCCGACCAGCAGA----C 4392 || || |||||||| | ||||||||| ||| || | || || |||||| | | Sbjct 32018 CTTCACCCTTTTTGTCGAAGCCCCTCACATCCTCCGGCCTGGCCTTTCCAGCAAATAAAC 32077 Query 4393 TCTA-TGTCCCCTTTTATTAACTATCTGTCCATCGATAATCTCCATCAGATCTGGTCTTT 4451 || || | |||| | ||||||| || | ||| |||| | || ||||| | Sbjct 32078 TCCCCTGGCAAGTTTTCTAGACTATCTC-----CGTTGATCACCATTAAGTCAGGTCTAT 32132 Query 4452 GATTGTAATAAATCAGACTCTGTTCA-AAGAATTCATGGGTTCTAGATATTAAGTTGGGG 4510 |||||||||| || || || | ||||| |||||||||||| | || ||||| Sbjct 32133 CCTTGTAATAAAATAGTG-CTTTTGAGAAGAACTCATGGGTTCTAACAAACAAATTGGGC 32191 Query 4511 TATCCCAAAAATTGTCCCATTACCTTGAATGTGGGATTATTGGCTGCTCCCCTCTGATGA 4570 |||| || |||| |||||| || ||| |||| ||| ||| |||| ||||||| | Sbjct 32192 AATCCAAAGAATTTTCCCATAACGGAAAATACCGGATCATTTGCTTCTCCTCTCTGATAA 32251 Query 4571 TTGTTCCATTTTTCATAATCTACATGGTTGGCAAAGCTTACATGATCATAATTATCCGTA 4630 |||||||| |||||||| || || ||||| |||| | || | ||||||| | || Sbjct 32252 TTGTTCCACTTTTCATAGTCAACGTGGTTAGCAATTGTAACCTCGTCATAATCTTGTGTG 32311 Query 4631 CCTTGACCATATG-TGTTGTCCATTAATTTTTTAGTCAAAACGGTGGAGTTATCTGCCAT 4689 ||||||| | | || | | ||| | ||| || || | || | | ||| ||||| Sbjct 32312 GTTTGACCAGAAGATGCT-TGCATCATTTTATTGACCACTGTGTTGTAATCATCAGCCAT 32370 Query 4690 GGTTAGACCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATATTCTGTTATTACGAA 4749 |||| |||| | |||| ||||| || |||||||| |||| || || ||||| ||||| Sbjct 32371 AGTTAAACCTGTGCATAACGGGACGAAGTGCTTCTTTATCAAGTACTCAGTTATGACGAA 32430 Query 4750 GTATTCTCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCCTTTTATTTTCAGTTCACG 4809 ||| |||| || |||| ||| || ||||| || | ||||| ||||| ||| | Sbjct 32431 GTAATCTCGTAATGCCCAACTCATCAGGGCAAAGAACCGACCTTTAGGTTTCAATTCCCT 32490 Query 4810 CT-CTTTGCCTTTAAGTCCGATAAGAAGTT 4838 || ||||||| | || ||| || | |||| Sbjct 32491 CTCCTTTGCCCTCAA-TCCAATGACCAGTT 32519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35845838645376