Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_007020.1 Length=11440 Score E Sequences producing significant alignments: (Bits) Value seq1440 123 2e-24 seq9517 116 3e-22 seq8251 116 3e-22 seq1814 116 3e-22 >seq1440 Length=90230 Score = 123 bits (136), Expect = 2e-24 Identities = 377/567 (66%), Gaps = 28/567 (5%) Strand=Plus/Plus Query 6586 ATAGGTCTAAGACCAAAAGAGAGAGAACTGAAGAGAGCTGGTAGGTTTTTTGCCCTGATG 6645 || ||||| ||| ||||||| ||| ||||| | || || |||||||| || ||| Sbjct 51986 ATCGGTCTGAGAGCAAAAGA---AGAGCTGAAACTAAAAGGAAGATTTTTTGCTCTCATG 52042 Query 6646 AGTTGGGAGCTCAGAGAGTACTTCGTTTTTACTGAGTATCTGATTAAGGAACATTTCATT 6705 |||||| || | || ||||| || | || |||||| |||||||| | ||||| || Sbjct 52043 AGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTT 52102 Query 6706 CCTCTTTTTAAGGGGTTGACGATGGCCGATGATATGA---CCGGAGTCATCAAGAAACTG 6762 ||||| | || || || || ||||| || || || ||| ||||| ||||| || Sbjct 52103 CCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAACACCGTAGTCAACAAGATGATG 52162 Query 6763 CTAGAGTGCTCCAACGGCCACGGAGAA---ACAGATTACTCAAATATAACCATATCAAAT 6819 | || || || | | || || | |||| ||| | | |||||| ||||| Sbjct 52163 CAAG----CTTCATCTGG-ACAGACCACTCACAG-TTATGATGAGGTGACCATAGCAAAT 52216 Query 6820 CACTTAGATTACTCGAAATGGAACAATCATCAAAGATATGAATCCAACAAATATGTATTC 6879 || | ||||| ||| ||||||||| |||||||| ||| || | || ||| Sbjct 52217 CATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTCTTC 52276 Query 6880 CAAGTGATGGGATCCTTTTTAGGATATCCAAATCTTATCTCTCGCACCCACGAATTTTTC 6939 ||| ||||| ||||| |||| || ||| | | | | || || ||||| || Sbjct 52277 TCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACATGAATTCTTT 52336 Query 6940 CAAAAATCCTTGATATATTTCATAAATAGGCCAGATTTAATGGTCGTAAAAGGGAACACA 6999 | | || || | |||| || | || | |||||||||||||| || |||| ||| Sbjct 52337 CGGGATTCATTCTTCTATTACAAAGATCGACCAGATTTAATGGTTATAGAAGGAGACA-- 52394 Query 7000 TTGGAGC-CTAA-GGGTCAGATGAG--GGTATGCTGGAACGGGCAAGCCGGGGGCCTCGA 7055 | | | |||| | ||| ||| || || ||| | || |||||||| || ||| Sbjct 52395 --GTATCACTAACAGCCCAGGGGAGTTTGTCTGTTGGCAAGGCCAAGCCGGTGGTTGCGA 52452 Query 7056 AGGTCTTCGTCAAAAAGGGTGGAGTATTGT-AAATCTCTTGCTCATCATGAG-GGTTGGA 7113 ||| | ||||| ||||| |||||| | || || | |||||| | | ||||| | || || Sbjct 52453 AGGCTTACGTCAGAAAGGTTGGAGTCTGGTCAACTATCTTGCAC-TAATGAGAGCTTCGA 52511 Query 7114 AAGCTCAGGAACACCGAGATCAAAATA 7140 || | || |||||| ||| |||||| Sbjct 52512 AATC-CAAGAACACAAGGAT-AAAATA 52536 >seq9517 Length=2557 Score = 116 bits (128), Expect = 3e-22 Identities = 375/566 (66%), Gaps = 26/566 (5%) Strand=Plus/Plus Query 6586 ATAGGTCTAAGACCAAAAGAGAGAGAACTGAAGAGAGCTGGTAGGTTTTTTGCCCTGATG 6645 || ||||| ||| ||||||| ||| ||||| | || || |||||||| || ||| Sbjct 567 ATCGGTCTGAGAGCAAAAGA---AGAGCTGAAACTAAAAGGAAGATTTTTTGCTCTCATG 623 Query 6646 AGTTGGGAGCTCAGAGAGTACTTCGTTTTTACTGAGTATCTGATTAAGGAACATTTCATT 6705 |||||| || | || ||||| || | || |||||| |||||||| | ||||| || Sbjct 624 AGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTT 683 Query 6706 CCTCTTTTTAAGGGGTTGACGATGGCCGATGAT---ATGACCGGAGTCATCAAGAAACTG 6762 ||||| | || || || || ||||| || || | |||| ||||| ||||| || Sbjct 684 CCTCTCTGTACAGGATTAACAATGGCTGACGACTACAACACCGTAGTCAACAAGATGATG 743 Query 6763 CTAGAGTGCTCCAACGGCCACGGAGAAA-CAGATTACTCAA-ATATAACCATATCAAATC 6820 | || || || | | || || | |||| | | | | |||||| |||||| Sbjct 744 CAAG----CTTCATCTGG-ACAGACCACTCAGAGTTATGATGAGGCGACCATAGCAAATC 798 Query 6821 ACTTAGATTACTCGAAATGGAACAATCATCAAAGATATGAATCCAACAAATATGTATTCC 6880 | | ||||| ||| ||||||||| |||||||| ||| || | || ||| Sbjct 799 ATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTCTTCT 858 Query 6881 AAGTGATGGGATCCTTTTTAGGATATCCAAATCTTATCTCTCGCACCCACGAATTTTTCC 6940 ||| ||||| ||||| |||| || ||| | | | | || || ||||| || | Sbjct 859 CAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACATGAATTCTTTC 918 Query 6941 AAAAATCCTTGATATATTTCATAAATAGGCCAGATTTAATGGTCGTAAAAGGGAACACAT 7000 | || || | |||| || | || | ||||||||||| || || |||| ||| Sbjct 919 GGGATTCATTCTTCTATTACAAAGATCGACCAGATTTAATAGTTATAGAAGGAGACA--- 975 Query 7001 TGGAGC-CTAA-GGGTCAGATGAG--GGTATGCTGGAACGGGCAAGCCGGGGGCCTCGAA 7056 | | | |||| | ||| ||| || || ||| | || |||||||| || |||| Sbjct 976 -GTATCACTAACAGCCCAGGGGAGTTTGTCTGTTGGCAAGGCCAAGCCGGTGGTTGCGAA 1034 Query 7057 GGTCTTCGTCAAAAAGGGTGGAGTATTGT-AAATCTCTTGCTCATCATGAG-GGTTGGAA 7114 || | ||||| ||||| |||||| | || || | |||||| | | ||||| | || ||| Sbjct 1035 GGCTTACGTCAGAAAGGTTGGAGTCTGGTCAACTATCTTGCAC-TAATGAGAGCTTCGAA 1093 Query 7115 AGCTCAGGAACACCGAGATCAAAATA 7140 | | || |||||| ||| |||||| Sbjct 1094 ATC-CAAGAACACAAGGAT-AAAATA 1117 >seq8251 Length=2688 Score = 116 bits (128), Expect = 3e-22 Identities = 375/566 (66%), Gaps = 26/566 (5%) Strand=Plus/Plus Query 6586 ATAGGTCTAAGACCAAAAGAGAGAGAACTGAAGAGAGCTGGTAGGTTTTTTGCCCTGATG 6645 || ||||| ||| ||||||| ||| ||||| | || || |||||||| || ||| Sbjct 242 ATCGGTCTGAGAGCAAAAGA---AGAGCTGAAACTAAAAGGAAGATTTTTTGCTCTCATG 298 Query 6646 AGTTGGGAGCTCAGAGAGTACTTCGTTTTTACTGAGTATCTGATTAAGGAACATTTCATT 6705 |||||| || | || ||||| || | || |||||| |||||||| | ||||| || Sbjct 299 AGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTT 358 Query 6706 CCTCTTTTTAAGGGGTTGACGATGGCCGATGATATGA---CCGGAGTCATCAAGAAACTG 6762 ||||| | || || || || ||||| || || || ||| ||||| ||||| || Sbjct 359 CCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAACACCGTAGTCAACAAGATGATG 418 Query 6763 CTAGAGTGCTCCAACGGCCACGGAGAAA-CAGATTACTCAA-ATATAACCATATCAAATC 6820 | || || || | | || || | |||| | | | | |||||| |||||| Sbjct 419 CAAG----CTTCATCTGG-ACAGACCACTCAGAGTTATGATGAGGCGACCATAGCAAATC 473 Query 6821 ACTTAGATTACTCGAAATGGAACAATCATCAAAGATATGAATCCAACAAATATGTATTCC 6880 | | ||||| ||| ||||||||| |||||||| ||| || | || ||| Sbjct 474 ATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTCTTCT 533 Query 6881 AAGTGATGGGATCCTTTTTAGGATATCCAAATCTTATCTCTCGCACCCACGAATTTTTCC 6940 ||| ||||| ||||| |||| || ||| | | | | || || ||||| || | Sbjct 534 CAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACATGAATTCTTTC 593 Query 6941 AAAAATCCTTGATATATTTCATAAATAGGCCAGATTTAATGGTCGTAAAAGGGAACACAT 7000 | || || | |||| || | || | ||||||||||| || || |||| ||| Sbjct 594 GGGATTCATTCTTCTATTACAAAGATCGACCAGATTTAATAGTTATAGAAGGAGACA--- 650 Query 7001 TGGAGC-CTAA-GGGTCAGATGAG--GGTATGCTGGAACGGGCAAGCCGGGGGCCTCGAA 7056 | | | |||| | ||| ||| || || ||| | || |||||||| || |||| Sbjct 651 -GTATCACTAACAGCCCAGGGGAGTTTGTCTGTTGGCAAGGCCAAGCCGGTGGTTGCGAA 709 Query 7057 GGTCTTCGTCAAAAAGGGTGGAGTATTGT-AAATCTCTTGCTCATCATGAG-GGTTGGAA 7114 || | ||||| ||||| |||||| | || || | |||||| | | ||||| | || ||| Sbjct 710 GGCTTACGTCAGAAAGGTTGGAGTCTGGTCAACTATCTTGCAC-TAATGAGAGCTTCGAA 768 Query 7115 AGCTCAGGAACACCGAGATCAAAATA 7140 | | || |||||| ||| |||||| Sbjct 769 ATC-CAAGAACACAAGGAT-AAAATA 792 >seq1814 Length=63972 Score = 116 bits (128), Expect = 3e-22 Identities = 375/566 (66%), Gaps = 26/566 (5%) Strand=Plus/Plus Query 6586 ATAGGTCTAAGACCAAAAGAGAGAGAACTGAAGAGAGCTGGTAGGTTTTTTGCCCTGATG 6645 || ||||| ||| ||||||| ||| ||||| | || || |||||||| || ||| Sbjct 1648 ATCGGTCTGAGAGCAAAAGA---AGAGCTGAAACTAAAAGGAAGATTTTTTGCTCTCATG 1704 Query 6646 AGTTGGGAGCTCAGAGAGTACTTCGTTTTTACTGAGTATCTGATTAAGGAACATTTCATT 6705 |||||| || | || ||||| || | || |||||| |||||||| | ||||| || Sbjct 1705 AGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTT 1764 Query 6706 CCTCTTTTTAAGGGGTTGACGATGGCCGATGATATGA---CCGGAGTCATCAAGAAACTG 6762 ||||| | || || || || ||||| || || || ||| ||||| ||||| || Sbjct 1765 CCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAACACCGTAGTCAACAAGATGATG 1824 Query 6763 CTAGAGTGCTCCAACGGCCACGGAGAAA-CAGATTACTCAA-ATATAACCATATCAAATC 6820 | || || || | | || || | |||| | | | | |||||| |||||| Sbjct 1825 CAAG----CTTCATCTGG-ACAGACCACTCAGAGTTATGATGAGGCGACCATAGCAAATC 1879 Query 6821 ACTTAGATTACTCGAAATGGAACAATCATCAAAGATATGAATCCAACAAATATGTATTCC 6880 | | ||||| ||| ||||||||| |||||||| ||| || | || ||| Sbjct 1880 ATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTCTTCT 1939 Query 6881 AAGTGATGGGATCCTTTTTAGGATATCCAAATCTTATCTCTCGCACCCACGAATTTTTCC 6940 ||| ||||| ||||| |||| || ||| | | | | || || ||||| || | Sbjct 1940 CAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACATGAATTCTTTC 1999 Query 6941 AAAAATCCTTGATATATTTCATAAATAGGCCAGATTTAATGGTCGTAAAAGGGAACACAT 7000 | || || | |||| || | || | ||||||||||| || || |||| ||| Sbjct 2000 GGGATTCATTCTTCTATTACAAAGATCGACCAGATTTAATAGTTATAGAAGGAGACA--- 2056 Query 7001 TGGAGC-CTAA-GGGTCAGATGAG--GGTATGCTGGAACGGGCAAGCCGGGGGCCTCGAA 7056 | | | |||| | ||| ||| || || ||| | || |||||||| || |||| Sbjct 2057 -GTATCACTAACAGCCCAGGGGAGTTTGTCTGTTGGCAAGGCCAAGCCGGTGGTTGCGAA 2115 Query 7057 GGTCTTCGTCAAAAAGGGTGGAGTATTGT-AAATCTCTTGCTCATCATGAG-GGTTGGAA 7114 || | ||||| ||||| |||||| | || || | |||||| | | ||||| | || ||| Sbjct 2116 GGCTTACGTCAGAAAGGTTGGAGTCTGGTCAACTATCTTGCAC-TAATGAGAGCTTCGAA 2174 Query 7115 AGCTCAGGAACACCGAGATCAAAATA 7140 | | || |||||| ||| |||||| Sbjct 2175 ATC-CAAGAACACAAGGAT-AAAATA 2198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36472030579040