Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_017685.1 Length=14717 Score E Sequences producing significant alignments: (Bits) Value seq1440 159 3e-35 seq9517 156 4e-34 seq8251 156 4e-34 seq1814 156 4e-34 seq2296 113 4e-21 >seq1440 Length=90230 Score = 159 bits (176), Expect = 3e-35 Identities = 205/280 (73%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 9919 GATTATTTTGTTATAACGGAGTATCTGATaaaaaaaTACTATGTTCCATTATTCAAAGGA 9978 ||||| ||||| |||||||||||| |||| || || | | |||||| | | | |||| Sbjct 52058 GATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGA 52117 Query 9979 TTAACAATGGCTGATGACCAAAATACTGTTGTCaaaaaaaTGTTAAAAGTATCTAAAGGA 10038 |||||||||||||| ||| | || || || ||||| || ||| | ||| || ||| Sbjct 52118 TTAACAATGGCTGACGACTAGAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGA 52177 Query 10039 CAGGGC-CTGATTGATTACAAAGAGATTACGATCGCTAATCATTTGGATTATGAGAAGTG 10097 ||| | || | | ||| | ||| | || || || |||||| | |||||||||||||| Sbjct 52178 CAGACCACTCACAG-TTATGATGAGGTGACCATAGCAAATCATGTTGATTATGAGAAGTG 52236 Query 10098 GAATAACTATCAAAGAAAAGAGTCCAATGGCCCTGTGTTCCGAGTCATGGGTCAATTTTT 10157 ||| || ||||||||| ||| |||| || || ||| ||||||||||| |||||| Sbjct 52237 GAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTT 52296 Query 10158 GGGCTTACCTAATTTAATAGAAAGAACTCATGAGTTTTTT 10197 || ||||||||||| | ||||| ||||| || ||| Sbjct 52297 TGGATTACCTAATTTGTTTACGAGAACACATGAATTCTTT 52336 >seq9517 Length=2557 Score = 156 bits (172), Expect = 4e-34 Identities = 204/280 (73%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 9919 GATTATTTTGTTATAACGGAGTATCTGATaaaaaaaTACTATGTTCCATTATTCAAAGGA 9978 ||||| ||||| |||||||||||| |||| || || | | |||||| | | | |||| Sbjct 639 GATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGA 698 Query 9979 TTAACAATGGCTGATGACCAAAATACTGTTGTCaaaaaaaTGTTAAAAGTATCTAAAGGA 10038 |||||||||||||| ||| | || || || ||||| || ||| | ||| || ||| Sbjct 699 TTAACAATGGCTGACGACTACAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGA 758 Query 10039 CAGGGC-CTGATTGATTACAAAGAGATTACGATCGCTAATCATTTGGATTATGAGAAGTG 10097 ||| | || | | ||| | ||| || || || |||||| | |||||||||||||| Sbjct 759 CAGACCACTCAGAG-TTATGATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTG 817 Query 10098 GAATAACTATCAAAGAAAAGAGTCCAATGGCCCTGTGTTCCGAGTCATGGGTCAATTTTT 10157 ||| || ||||||||| ||| |||| || || ||| ||||||||||| |||||| Sbjct 818 GAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTT 877 Query 10158 GGGCTTACCTAATTTAATAGAAAGAACTCATGAGTTTTTT 10197 || ||||||||||| | ||||| ||||| || ||| Sbjct 878 TGGATTACCTAATTTGTTTACGAGAACACATGAATTCTTT 917 >seq8251 Length=2688 Score = 156 bits (172), Expect = 4e-34 Identities = 204/280 (73%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 9919 GATTATTTTGTTATAACGGAGTATCTGATaaaaaaaTACTATGTTCCATTATTCAAAGGA 9978 ||||| ||||| |||||||||||| |||| || || | | |||||| | | | |||| Sbjct 314 GATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGA 373 Query 9979 TTAACAATGGCTGATGACCAAAATACTGTTGTCaaaaaaaTGTTAAAAGTATCTAAAGGA 10038 |||||||||||||| ||| | || || || ||||| || ||| | ||| || ||| Sbjct 374 TTAACAATGGCTGACGACTAGAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGA 433 Query 10039 CAGGGC-CTGATTGATTACAAAGAGATTACGATCGCTAATCATTTGGATTATGAGAAGTG 10097 ||| | || | | ||| | ||| || || || |||||| | |||||||||||||| Sbjct 434 CAGACCACTCAGAG-TTATGATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTG 492 Query 10098 GAATAACTATCAAAGAAAAGAGTCCAATGGCCCTGTGTTCCGAGTCATGGGTCAATTTTT 10157 ||| || ||||||||| ||| |||| || || ||| ||||||||||| |||||| Sbjct 493 GAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTT 552 Query 10158 GGGCTTACCTAATTTAATAGAAAGAACTCATGAGTTTTTT 10197 || ||||||||||| | ||||| ||||| || ||| Sbjct 553 TGGATTACCTAATTTGTTTACGAGAACACATGAATTCTTT 592 >seq1814 Length=63972 Score = 156 bits (172), Expect = 4e-34 Identities = 204/280 (73%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 9919 GATTATTTTGTTATAACGGAGTATCTGATaaaaaaaTACTATGTTCCATTATTCAAAGGA 9978 ||||| ||||| |||||||||||| |||| || || | | |||||| | | | |||| Sbjct 1720 GATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGA 1779 Query 9979 TTAACAATGGCTGATGACCAAAATACTGTTGTCaaaaaaaTGTTAAAAGTATCTAAAGGA 10038 |||||||||||||| ||| | || || || ||||| || ||| | ||| || ||| Sbjct 1780 TTAACAATGGCTGACGACTAGAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGA 1839 Query 10039 CAGGGC-CTGATTGATTACAAAGAGATTACGATCGCTAATCATTTGGATTATGAGAAGTG 10097 ||| | || | | ||| | ||| || || || |||||| | |||||||||||||| Sbjct 1840 CAGACCACTCAGAG-TTATGATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTG 1898 Query 10098 GAATAACTATCAAAGAAAAGAGTCCAATGGCCCTGTGTTCCGAGTCATGGGTCAATTTTT 10157 ||| || ||||||||| ||| |||| || || ||| ||||||||||| |||||| Sbjct 1899 GAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTT 1958 Query 10158 GGGCTTACCTAATTTAATAGAAAGAACTCATGAGTTTTTT 10197 || ||||||||||| | ||||| ||||| || ||| Sbjct 1959 TGGATTACCTAATTTGTTTACGAGAACACATGAATTCTTT 1998 >seq2296 Length=40579 Score = 113 bits (124), Expect = 4e-21 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 9919 GATTATTTTGTTATAACGGAGTATCTGATaaaaaaaTACTATGTTCCATTATTCAAAGGA 9978 ||||| ||||| |||||||||||| |||| || || | | |||||| | | | |||| Sbjct 1783 GATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGA 1842 Query 9979 TTAACAATGGCTGATGACCAAAATACTGTTGTCaaaaaaaTGTTAAAAGTATCTAAAGGA 10038 |||||||||||||| ||| | || || || ||||| || ||| | ||| || ||| Sbjct 1843 TTAACAATGGCTGACGACTACAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGA 1902 Query 10039 CAGGGC-CTGATTGATTACAAAGAGATTACGATCGCTAATCATTTGGATTATGAGAAGTG 10097 ||| | || | | ||| | ||| || || || |||||| | |||||||||||||| Sbjct 1903 CAGACCACTCAGAG-TTATGATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTG 1961 Query 10098 GAATAACTATCAAAGA 10113 ||| || ||||||||| Sbjct 1962 GAACAATTATCAAAGA 1977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46948521535600