Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_017714.1 Length=15867 Score E Sequences producing significant alignments: (Bits) Value seq9517 141 9e-30 seq1440 141 9e-30 seq8251 136 4e-28 seq1814 136 4e-28 seq2296 120 3e-23 >seq9517 Length=2557 Score = 141 bits (156), Expect = 9e-30 Identities = 223/317 (70%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 11058 AGGTAGATTCTTTTCATTGATGAGTTGGGAGTTAAGAGAGTATTTTGTATTCACAGAGTA 11117 ||| ||||| ||| | | ||||||||| | | || || ||||| | || ||||| Sbjct 602 AGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTA 661 Query 11118 TTTGATTAAAGAACATTTTGTGCCATTATTCAAAGGATTAACTATGGCAGATGATCTACA 11177 ||||||||| | |||||||| || | | | ||||||||| ||||| || || ||||| Sbjct 662 TTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGA-CTACA 720 Query 11178 A-ACTGTAATTAAAAAGATGATTGATGTATCAGCAGGACAAGGTACTGAAACCTATGAAA 11236 | || ||| | || |||||||| | | ||| | ||||| ||| | | ||||| Sbjct 721 ACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCAGAGTTATGATG 780 Query 11237 ACATAACAATAGCGAATAATATTGACTATGAGAAGTGGAATAATTATCAAAGATATGATT 11296 | || ||||| ||| || |||| |||||||||||||| |||||||||||| ||| Sbjct 781 AGGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGG 840 Query 11297 CAAATAGTGCAATTTTCACTGTCATGGGACAATTTTTAGGGTATCCAAAGTTAATAGCAA 11356 |||| | | | ||| | |||||||| | |||||| || | || || || | | | Sbjct 841 GAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGA 900 Query 11357 GAACTCATGAGTTTTTT 11373 |||| ||||| || ||| Sbjct 901 GAACACATGAATTCTTT 917 >seq1440 Length=90230 Score = 141 bits (156), Expect = 9e-30 Identities = 223/317 (70%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 11058 AGGTAGATTCTTTTCATTGATGAGTTGGGAGTTAAGAGAGTATTTTGTATTCACAGAGTA 11117 ||| ||||| ||| | | ||||||||| | | || || ||||| | || ||||| Sbjct 52021 AGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTA 52080 Query 11118 TTTGATTAAAGAACATTTTGTGCCATTATTCAAAGGATTAACTATGGCAGATGATCTACA 11177 ||||||||| | |||||||| || | | | ||||||||| ||||| || || ||| | Sbjct 52081 TTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGA-CTAGA 52139 Query 11178 A-ACTGTAATTAAAAAGATGATTGATGTATCAGCAGGACAAGGTACTGAAACCTATGAAA 11236 | || ||| | || |||||||| | | ||| | ||||| ||| | | ||||| Sbjct 52140 ACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCACAGTTATGATG 52199 Query 11237 ACATAACAATAGCGAATAATATTGACTATGAGAAGTGGAATAATTATCAAAGATATGATT 11296 | | || ||||| ||| || |||| |||||||||||||| |||||||||||| ||| Sbjct 52200 AGGTGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGG 52259 Query 11297 CAAATAGTGCAATTTTCACTGTCATGGGACAATTTTTAGGGTATCCAAAGTTAATAGCAA 11356 |||| | | | ||| | |||||||| | |||||| || | || || || | | | Sbjct 52260 GAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGA 52319 Query 11357 GAACTCATGAGTTTTTT 11373 |||| ||||| || ||| Sbjct 52320 GAACACATGAATTCTTT 52336 >seq8251 Length=2688 Score = 136 bits (150), Expect = 4e-28 Identities = 222/317 (70%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 11058 AGGTAGATTCTTTTCATTGATGAGTTGGGAGTTAAGAGAGTATTTTGTATTCACAGAGTA 11117 ||| ||||| ||| | | ||||||||| | | || || ||||| | || ||||| Sbjct 277 AGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTA 336 Query 11118 TTTGATTAAAGAACATTTTGTGCCATTATTCAAAGGATTAACTATGGCAGATGATCTACA 11177 ||||||||| | |||||||| || | | | ||||||||| ||||| || || ||| | Sbjct 337 TTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGA-CTAGA 395 Query 11178 A-ACTGTAATTAAAAAGATGATTGATGTATCAGCAGGACAAGGTACTGAAACCTATGAAA 11236 | || ||| | || |||||||| | | ||| | ||||| ||| | | ||||| Sbjct 396 ACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCAGAGTTATGATG 455 Query 11237 ACATAACAATAGCGAATAATATTGACTATGAGAAGTGGAATAATTATCAAAGATATGATT 11296 | || ||||| ||| || |||| |||||||||||||| |||||||||||| ||| Sbjct 456 AGGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGG 515 Query 11297 CAAATAGTGCAATTTTCACTGTCATGGGACAATTTTTAGGGTATCCAAAGTTAATAGCAA 11356 |||| | | | ||| | |||||||| | |||||| || | || || || | | | Sbjct 516 GAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGA 575 Query 11357 GAACTCATGAGTTTTTT 11373 |||| ||||| || ||| Sbjct 576 GAACACATGAATTCTTT 592 >seq1814 Length=63972 Score = 136 bits (150), Expect = 4e-28 Identities = 222/317 (70%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 11058 AGGTAGATTCTTTTCATTGATGAGTTGGGAGTTAAGAGAGTATTTTGTATTCACAGAGTA 11117 ||| ||||| ||| | | ||||||||| | | || || ||||| | || ||||| Sbjct 1683 AGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTA 1742 Query 11118 TTTGATTAAAGAACATTTTGTGCCATTATTCAAAGGATTAACTATGGCAGATGATCTACA 11177 ||||||||| | |||||||| || | | | ||||||||| ||||| || || ||| | Sbjct 1743 TTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGA-CTAGA 1801 Query 11178 A-ACTGTAATTAAAAAGATGATTGATGTATCAGCAGGACAAGGTACTGAAACCTATGAAA 11236 | || ||| | || |||||||| | | ||| | ||||| ||| | | ||||| Sbjct 1802 ACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCAGAGTTATGATG 1861 Query 11237 ACATAACAATAGCGAATAATATTGACTATGAGAAGTGGAATAATTATCAAAGATATGATT 11296 | || ||||| ||| || |||| |||||||||||||| |||||||||||| ||| Sbjct 1862 AGGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGG 1921 Query 11297 CAAATAGTGCAATTTTCACTGTCATGGGACAATTTTTAGGGTATCCAAAGTTAATAGCAA 11356 |||| | | | ||| | |||||||| | |||||| || | || || || | | | Sbjct 1922 GAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGA 1981 Query 11357 GAACTCATGAGTTTTTT 11373 |||| ||||| || ||| Sbjct 1982 GAACACATGAATTCTTT 1998 >seq2296 Length=40579 Score = 120 bits (132), Expect = 3e-23 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 11058 AGGTAGATTCTTTTCATTGATGAGTTGGGAGTTAAGAGAGTATTTTGTATTCACAGAGTA 11117 ||| ||||| ||| | | ||||||||| | | || || ||||| | || ||||| Sbjct 1746 AGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTA 1805 Query 11118 TTTGATTAAAGAACATTTTGTGCCATTATTCAAAGGATTAACTATGGCAGATGATCTACA 11177 ||||||||| | |||||||| || | | | ||||||||| ||||| || || ||||| Sbjct 1806 TTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGA-CTACA 1864 Query 11178 A-ACTGTAATTAAAAAGATGATTGATGTATCAGCAGGACAAGGTACTGAAACCTATGAAA 11236 | || ||| | || |||||||| | | ||| | ||||| ||| | | ||||| Sbjct 1865 ACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCAGAGTTATGATG 1924 Query 11237 ACATAACAATAGCGAATAATATTGACTATGAGAAGTGGAATAATTATCAAAGA 11289 | || ||||| ||| || |||| |||||||||||||| |||||||||||| Sbjct 1925 AGGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGA 1977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50626368931100