Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_025341.1 Length=11139 Score E Sequences producing significant alignments: (Bits) Value seq1440 95.1 9e-16 seq9517 87.8 1e-13 seq8251 87.8 1e-13 seq1814 87.8 1e-13 >seq1440 Length=90230 Score = 95.1 bits (104), Expect = 9e-16 Identities = 275/412 (67%), Gaps = 25/412 (6%) Strand=Plus/Plus Query 6270 ATCGGATTGAAAGGGAAAGAGAGAGAAGTGAAAGTAAAAGGACGGTTCTTTTCACTCATG 6329 ||||| ||| || ||||| ||| ||||| |||||||| | || ||| | |||||| Sbjct 51986 ATCGGTCTGAGAGCAAAAGA---AGAGCTGAAACTAAAAGGAAGATTTTTTGCTCTCATG 52042 Query 6330 TCGTGGAAACTAAGAGAATATTTTGTTGTCACAGAATACCTAATCAAAGAACATTTCGTC 6389 ||| || | || || ||||| | || || || | || || | ||||| || Sbjct 52043 AGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTT 52102 Query 6390 CCTCTCTTCAATGGATTGACTATGGCGGATGACATGACCACCGTAAT-ATCAAAACTAAT 6448 ||||||| | ||||| || ||||| || ||| || ||||||| | | ||| | | || Sbjct 52103 CCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAACACCGTAGTCAACAAGA-TGAT 52161 Query 6449 GGATCGCACTCAGGGCCAAGGAGGAGAGGACT-ACACCCAAGTT----TG--CATTGCTA 6501 | | || ||| ||| ||| ||| ||| | | | || ||| || | Sbjct 52162 GCAA-GCT-TCATCT----GGAC-AGACCACTCACAGTTATGATGAGGTGACCATAGCAA 52214 Query 6502 ATCATATCGATTATGAAAAGTGGAACAATCATCAGAGAAAGCGTGCAACCGGACCTGTGT 6561 ||||| | |||||||| |||||||||||| |||| ||| | || | || || | Sbjct 52215 ATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTCT 52274 Query 6562 TCATAGTCATGGGACAATTCCTTGGATTTCCTAAACTGATCTATAGAACACATGAGTTCT 6621 || ||||||||| | ||| ||||||| ||||| || | ||||||||||| |||| Sbjct 52275 TCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACATGAATTCT 52334 Query 6622 TT---GAATCTAGCTGGGTGTATTACAATGCTAGACCTGATTTAATGGTCAT 6670 || || || || | |||||||| | | |||| ||||||||||| || Sbjct 52335 TTCGGGATTCATTCT---TCTATTACAAAGATCGACCAGATTTAATGGTTAT 52383 >seq9517 Length=2557 Score = 87.8 bits (96), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 6494 CATTGCTAATCATATCGATTATGAAAAGTGGAACAATCATCAGAGAAAGCGTGCAACCGG 6553 ||| || |||||| | |||||||| |||||||||||| |||| ||| | || | Sbjct 788 CATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGA 847 Query 6554 ACCTGTGTTCATAGTCATGGGACAATTCCTTGGATTTCCTAAACTGATCTATAGAACACA 6613 || || ||| ||||||||| | ||| ||||||| ||||| || | |||||||| Sbjct 848 TCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACA 907 Query 6614 TGAGTTCTTT---GAATCTAGCTGGGTGTATTACAATGCTAGACCTGATTTAATGGTCAT 6670 ||| |||||| || || || | |||||||| | | |||| |||||||| || || Sbjct 908 TGAATTCTTTCGGGATTCATTCT---TCTATTACAAAGATCGACCAGATTTAATAGTTAT 964 >seq8251 Length=2688 Score = 87.8 bits (96), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 6494 CATTGCTAATCATATCGATTATGAAAAGTGGAACAATCATCAGAGAAAGCGTGCAACCGG 6553 ||| || |||||| | |||||||| |||||||||||| |||| ||| | || | Sbjct 463 CATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGA 522 Query 6554 ACCTGTGTTCATAGTCATGGGACAATTCCTTGGATTTCCTAAACTGATCTATAGAACACA 6613 || || ||| ||||||||| | ||| ||||||| ||||| || | |||||||| Sbjct 523 TCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACA 582 Query 6614 TGAGTTCTTT---GAATCTAGCTGGGTGTATTACAATGCTAGACCTGATTTAATGGTCAT 6670 ||| |||||| || || || | |||||||| | | |||| |||||||| || || Sbjct 583 TGAATTCTTTCGGGATTCATTCT---TCTATTACAAAGATCGACCAGATTTAATAGTTAT 639 >seq1814 Length=63972 Score = 87.8 bits (96), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 6494 CATTGCTAATCATATCGATTATGAAAAGTGGAACAATCATCAGAGAAAGCGTGCAACCGG 6553 ||| || |||||| | |||||||| |||||||||||| |||| ||| | || | Sbjct 1869 CATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGA 1928 Query 6554 ACCTGTGTTCATAGTCATGGGACAATTCCTTGGATTTCCTAAACTGATCTATAGAACACA 6613 || || ||| ||||||||| | ||| ||||||| ||||| || | |||||||| Sbjct 1929 TCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACA 1988 Query 6614 TGAGTTCTTT---GAATCTAGCTGGGTGTATTACAATGCTAGACCTGATTTAATGGTCAT 6670 ||| |||||| || || || | |||||||| | | |||| |||||||| || || Sbjct 1989 TGAATTCTTTCGGGATTCATTCT---TCTATTACAAAGATCGACCAGATTTAATAGTTAT 2045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35509378772280