Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_025356.1 Length=11097 Score E Sequences producing significant alignments: (Bits) Value seq1440 93.3 3e-15 seq9517 91.5 1e-14 seq8251 89.7 4e-14 seq1814 89.7 4e-14 >seq1440 Length=90230 Score = 93.3 bits (102), Expect = 3e-15 Identities = 310/469 (66%), Gaps = 20/469 (4%) Strand=Plus/Plus Query 6343 GGAAGATTCTTTTCCCTGATGTCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTAC 6402 |||||||| ||| | || ||| ||| || | || || |||||||| || ||||| Sbjct 52022 GGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTAT 52081 Query 6403 TTAATAAAGACTCATTATGTACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACA 6462 || || |||| |||| ||| || | | | |||| | |||||||| || || || Sbjct 52082 TTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAAC 52141 Query 6463 TCAGTTGTAAAGAAGATGTTGGACAACACGAATGGACA-AGGACTGGATGATTATTCATC 6521 | || || || |||||| || | | |||||| | ||| | |||| || Sbjct 52142 ACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCACAG-TTATG-AT- 52198 Query 6522 GATTTG--CATCGCCAATCACATCGACTATGAGAAGTGGAATAATCATCAGAGAAAAGAA 6579 || || ||| || ||||| | || |||||||||||||| ||| |||| ||| || Sbjct 52199 GAGGTGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAG 52258 Query 6580 TCCAATGGGCCTGTGTTTCGAGTCATGGGGC-AGTTTTTGGGTTATCCCAGATTGTTTGA 6638 |||| || || || ||||||||| | | ||||||| ||| || | |||||| Sbjct 52259 GGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTA-CCTAATTTGTTTAC 52317 Query 6639 AAGAACCCATGAGTTTTTT---GAATCAAGCCTCATTTACTACAACGGCAGACCAGACTT 6695 ||||| ||||| || ||| || ||| || | || ||||| | ||||||| || Sbjct 52318 GAGAACACATGAATTCTTTCGGGATTCA---TTCTTCTATTACAAAGATCGACCAGATTT 52374 Query 6696 GATGGATGTAAGAGGAGATTCGTTGATCAATACCA---CTGAAAAGTTGGTGTGTTGGGA 6752 |||| | || |||||| || |||| || || | | |||| || |||||| | Sbjct 52375 AATGGTTATAGAAGGAGA-CAGT--ATCACTAACAGCCCAGGGGAGTTTGTCTGTTGGCA 52431 Query 6753 GGGTCAGGCGGGAGGATTGGAAGGATTGAGACAAAAAGGATGGAGTGTG 6801 || || || || || | ||||| || | || ||||| |||||| || Sbjct 52432 AGGCCAAGCCGGTGGTTGCGAAGGCTTACGTCAGAAAGGTTGGAGTCTG 52480 >seq9517 Length=2557 Score = 91.5 bits (100), Expect = 1e-14 Identities = 312/471 (66%), Gaps = 24/471 (5%) Strand=Plus/Plus Query 6343 GGAAGATTCTTTTCCCTGATGTCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTAC 6402 |||||||| ||| | || ||| ||| || | || || |||||||| || ||||| Sbjct 603 GGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTAT 662 Query 6403 TTAATAAAGACTCATTATGTACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACA 6462 || || |||| |||| ||| || | | | |||| | |||||||| || || || ||| Sbjct 663 TTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGA-CT-ACA 720 Query 6463 TCA--GTTGTAAAGAAGATGTTGGACAACACGAATGGACA-AGGACTG-GA-TGATTATT 6517 || || || || |||||| || | | |||||| | ||| || | || || Sbjct 721 ACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCAGAGTTATGATG 780 Query 6518 CATCGATTTGCATCGCCAATCACATCGACTATGAGAAGTGGAATAATCATCAGAGAAAAG 6577 ||| ||| || ||||| | || |||||||||||||| ||| |||| ||| | Sbjct 781 AGGCGAC---CATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTG 837 Query 6578 AATCCAATGGGCCTGTGTTTCGAGTCATGGGGC-AGTTTTTGGGTTATCCCAGATTGTTT 6636 | |||| || || || ||||||||| | | ||||||| ||| || | |||||| Sbjct 838 AGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTA-CCTAATTTGTTT 896 Query 6637 GAAAGAACCCATGAGTTTTTT---GAATCAAGCCTCATTTACTACAACGGCAGACCAGAC 6693 ||||| ||||| || ||| || ||| || | || ||||| | ||||||| Sbjct 897 ACGAGAACACATGAATTCTTTCGGGATTCA---TTCTTCTATTACAAAGATCGACCAGAT 953 Query 6694 TTGATGGATGTAAGAGGAGATTCGTTGATCAATACCA---CTGAAAAGTTGGTGTGTTGG 6750 || || | | || |||||| || |||| || || | | |||| || |||||| Sbjct 954 TTAATAGTTATAGAAGGAGA-CAGT--ATCACTAACAGCCCAGGGGAGTTTGTCTGTTGG 1010 Query 6751 GAGGGTCAGGCGGGAGGATTGGAAGGATTGAGACAAAAAGGATGGAGTGTG 6801 | || || || || || | ||||| || | || ||||| |||||| || Sbjct 1011 CAAGGCCAAGCCGGTGGTTGCGAAGGCTTACGTCAGAAAGGTTGGAGTCTG 1061 >seq8251 Length=2688 Score = 89.7 bits (98), Expect = 4e-14 Identities = 308/469 (66%), Gaps = 20/469 (4%) Strand=Plus/Plus Query 6343 GGAAGATTCTTTTCCCTGATGTCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTAC 6402 |||||||| ||| | || ||| ||| || | || || |||||||| || ||||| Sbjct 278 GGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTAT 337 Query 6403 TTAATAAAGACTCATTATGTACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACA 6462 || || |||| |||| ||| || | | | |||| | |||||||| || || || Sbjct 338 TTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAAC 397 Query 6463 TCAGTTGTAAAGAAGATGTTGGACAACACGAATGGACA-AGGACTG-GA-TGATTATTCA 6519 | || || || |||||| || | | |||||| | ||| || | || || Sbjct 398 ACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCAGAGTTATGATGAG 457 Query 6520 TCGATTTGCATCGCCAATCACATCGACTATGAGAAGTGGAATAATCATCAGAGAAAAGAA 6579 ||| ||| || ||||| | || |||||||||||||| ||| |||| ||| || Sbjct 458 GCGAC---CATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAG 514 Query 6580 TCCAATGGGCCTGTGTTTCGAGTCATGGGGC-AGTTTTTGGGTTATCCCAGATTGTTTGA 6638 |||| || || || ||||||||| | | ||||||| ||| || | |||||| Sbjct 515 GGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTA-CCTAATTTGTTTAC 573 Query 6639 AAGAACCCATGAGTTTTTT---GAATCAAGCCTCATTTACTACAACGGCAGACCAGACTT 6695 ||||| ||||| || ||| || ||| || | || ||||| | ||||||| || Sbjct 574 GAGAACACATGAATTCTTTCGGGATTCA---TTCTTCTATTACAAAGATCGACCAGATTT 630 Query 6696 GATGGATGTAAGAGGAGATTCGTTGATCAATACCA---CTGAAAAGTTGGTGTGTTGGGA 6752 || | | || |||||| || |||| || || | | |||| || |||||| | Sbjct 631 AATAGTTATAGAAGGAGA-CAGT--ATCACTAACAGCCCAGGGGAGTTTGTCTGTTGGCA 687 Query 6753 GGGTCAGGCGGGAGGATTGGAAGGATTGAGACAAAAAGGATGGAGTGTG 6801 || || || || || | ||||| || | || ||||| |||||| || Sbjct 688 AGGCCAAGCCGGTGGTTGCGAAGGCTTACGTCAGAAAGGTTGGAGTCTG 736 >seq1814 Length=63972 Score = 89.7 bits (98), Expect = 4e-14 Identities = 308/469 (66%), Gaps = 20/469 (4%) Strand=Plus/Plus Query 6343 GGAAGATTCTTTTCCCTGATGTCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTAC 6402 |||||||| ||| | || ||| ||| || | || || |||||||| || ||||| Sbjct 1684 GGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTAT 1743 Query 6403 TTAATAAAGACTCATTATGTACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACA 6462 || || |||| |||| ||| || | | | |||| | |||||||| || || || Sbjct 1744 TTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAAC 1803 Query 6463 TCAGTTGTAAAGAAGATGTTGGACAACACGAATGGACA-AGGACTG-GA-TGATTATTCA 6519 | || || || |||||| || | | |||||| | ||| || | || || Sbjct 1804 ACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCAGAGTTATGATGAG 1863 Query 6520 TCGATTTGCATCGCCAATCACATCGACTATGAGAAGTGGAATAATCATCAGAGAAAAGAA 6579 ||| ||| || ||||| | || |||||||||||||| ||| |||| ||| || Sbjct 1864 GCGAC---CATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAG 1920 Query 6580 TCCAATGGGCCTGTGTTTCGAGTCATGGGGC-AGTTTTTGGGTTATCCCAGATTGTTTGA 6638 |||| || || || ||||||||| | | ||||||| ||| || | |||||| Sbjct 1921 GGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTA-CCTAATTTGTTTAC 1979 Query 6639 AAGAACCCATGAGTTTTTT---GAATCAAGCCTCATTTACTACAACGGCAGACCAGACTT 6695 ||||| ||||| || ||| || ||| || | || ||||| | ||||||| || Sbjct 1980 GAGAACACATGAATTCTTTCGGGATTCA---TTCTTCTATTACAAAGATCGACCAGATTT 2036 Query 6696 GATGGATGTAAGAGGAGATTCGTTGATCAATACCA---CTGAAAAGTTGGTGTGTTGGGA 6752 || | | || |||||| || |||| || || | | |||| || |||||| | Sbjct 2037 AATAGTTATAGAAGGAGA-CAGT--ATCACTAACAGCCCAGGGGAGTTTGTCTGTTGGCA 2093 Query 6753 GGGTCAGGCGGGAGGATTGGAAGGATTGAGACAAAAAGGATGGAGTGTG 6801 || || || || || | ||||| || | || ||||| |||||| || Sbjct 2094 AGGCCAAGCCGGTGGTTGCGAAGGCTTACGTCAGAAAGGTTGGAGTCTG 2142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35375055264360